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Reference Detail
| Reference | ||
|---|---|---|
| Author | Zhao H., Ma H., Yu L., Wang X., Zhao J. | |
| Title | Genome-wide survey and expression analysis of amino acid transporter gene family in rice (Oryza sativa L.). | |
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Abstract: Amino acid transporters (AATs) that transport amino acids across cellular membranes are essential for plant growth and development. To date, a genome-wide overview of the AAT gene family in rice is not yet available. In this study, a total of 85 AAT genes were identified in rice genome and were classified into eleven distinct subfamilies based upon their sequence composition and phylogenetic relationship. A large number of OsAAT genes were expanded via gene duplication, 23 and 24 OsAAT genes were tandemly and segmentally duplicated, respectively. Comprehensive analyses were performed to investigate the expression profiles of OsAAT genes in various stages of vegetative and reproductive development by using data from EST, Microarrays, MPSS and Real-time PCR. Many OsAAT genes exhibited abundant and tissue-specific expression patterns. Moreover, 21 OsAAT genes were found to be differentially expressed under the treatments of abiotic stresses. Comparative analysis indicates that 26 AAT genes with close evolutionary relationships between rice and Arabidopsis exhibited similar expression patterns. This study will facilitate further studies on OsAAT family and provide useful clues for functional validation of OsAATs. |
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| Journal | PLoS ONE | |
| Country | China | |
| Volume | 7(11) | |
| Pages | e49210 | |
| Year | 2012 | |
| PubMed ID | 23166615 | |
| PubMed Central ID | 3499563 | |
| DOI | 10.1371/journal.pone.0049210 | |
| URL | - | |
| Relation | ||
| Gene | AAP10A AAP10B AAP10C AAP10D AAP11A AAP11B AAP11C AAP11D AAP11E AAP11F AAP11G AAP12A AAP12B AAP12C AAP3 AAP6 AAP7A AAP7B AAP7C ANT1 ANT2 ANT3 ANT4 ATL1 ATL10 ATL11 ATL12 ATL13 ATL15 ATL16 ATL17 ATL2 ATL3 ATL5 ATL6 ATL7 ATL8 ATL9 BAT1 BAT2 BAT3 BAT4 BAT5 BAT6 BAT7 BH4 CAT1 CAT10 CAT11 CAT2 CAT3 CAT4 CAT5 CAT6 CAT7 CAT8 CAT9 CCC1 GAT1 GAT2 GAT3 GAT4 HT LAT2 LAT3 LAT4 LAT6 LHT2 LHT4A LHT7 LHT8 LHT9 PROT PROT1 PROT3 PUT1 PUT2 PUT3 RAU1 RAU2 RAU3 RAU4 _ _ _ | |
| INSD | - | |
| Strain | Wild Core Collection | - |
| Induced Mutation Lines(NIG Collection) | - | |
| Sterile Seed Strain | - | |
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Lethal Embryo Mutantion Strain |
- | |
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Stages in Each Organ - Muant Lines (Gene) |
- | |
| Cultivated Varieties(NIG Collection) | - | |
| Stages in Each Organ | - | |
