Tools - Reference - Detail

Reference Detail

Reference
Author Luo,S., Zhang,Y., Hu,Q., Chen,J., Li,K., Lu,C., Liu,H., Wang,W. and Kuang,H.
Title Dynamic Nucleotide-Binding-Site and Leucine-Rich-Repeat- encoding Genes in the Grass Family
Abstract:
The proper use of resistance genes (R genes) requires a comprehensive understanding of their genomics and evolution. We analyzed genes encoding nucleotide-binding sites and leucine-rich repeats in the genomes of rice (Oryza sativa), maize (Zea mays), sorghum (Sorghum bicolor), and Brachypodium distachyon. Frequent deletions and translocations of R genes generated prevalent presence/absence polymorphism between different accessions/species. The deletions were caused by unequal crossover, homologous repair, nonhomologous repair, or other unknown mechanisms. R gene loci identified from different genomes were mapped onto the chromosomes of rice cv Nipponbare using comparative genomics, resulting in an integrated map of 495 R loci. Sequence analysis of R genes from the partially sequenced genomes of an African rice cultivar and 10 wild accessions suggested that there are many additional R gene lineages in the AA genome of Oryza. The R genes with chimeric structures (termed type I R genes) are diverse in different rice accessions but only account for 5.8% of all R genes in the Nipponbare genome. In contrast, the vast majority of R genes in the rice genome are type II R genes, which are highly conserved in different accessions. Surprisingly, pseudogene-causing mutations in some type II lineages are often conserved, indicating that their conservations were not due to their functions. Functional R genes cloned from rice so far have more type II R genes than type I R genes, but type I R genes are predicted to contribute considerable diversity in wild species. Type I R genes tend to reduce the microsynteny of their flanking regions significantly more than type II R genes, and their flanking regions have slightly but significantly lower G/C content than those of type II R genes.
Journal Plant Physiol.
Country
Volume 159(1)
Pages 197-210
Year 2012
PubMed ID 22422941
PubMed Central ID -
DOI -
URL -
Relation
Gene PI3 PI36 PI37 PI5-2 PI9 PIA PIB PID3 PIK PIKM PIKP PIT PITA PIZ PIZT
INSD JQ656344 JQ656345 JQ656346 JQ656347 JQ656348 JQ656349 JQ656350 JQ656351 JQ656352 JQ656353 JQ656354 JQ656355 JQ656356 JQ656357 JQ656358 JQ656359 JQ656360 JQ656361 JQ656362 JQ656363 JQ656364 JQ656365 JQ656366 JQ656367 JQ656368 JQ656369 JQ656370 JQ656371 JQ656372 JQ656373 JQ656374 JQ656375 JQ656376 JQ656377 JQ656378 JQ656379 JQ656380 JQ656381 JQ656382 JQ656383 JQ656384 JQ656385 JQ656386 JQ656387 JQ656388 JQ656389 JQ656390 JQ656391 JQ656392 JQ656393 JQ656394 JQ656395 JQ656396 JQ656397 JQ656398 JQ656399 JQ656400 JQ656401 JQ656402 JQ656403 JQ656404 JQ656405 JQ656406 JQ656407 JQ656408 JQ656409 JQ656410 JQ656411 JQ656412 JQ656413 JQ656414 JQ656415 JQ656416 JQ656417 JQ656418 JQ656419 JQ656420 JQ656421 JQ656422 JQ656423 JQ656424 JQ656425 JQ656426 JQ656427 JQ656428 JQ656429 JQ656430 JQ656431 JQ656432 JQ656433 JQ656434 JQ656435 JQ656436 JQ656437 JQ656438 JQ656439 JQ656440 JQ656441 JQ656442 JQ656443 JQ656444 JQ656445 JQ656446 JQ656447 JQ656448 JQ656449 JQ656450 JQ656451 JQ656452 JQ656453 JQ656454 JQ656455 JQ656456 JQ656457 JQ656458 JQ656459 JQ656460 JQ656461 JQ656462 JQ656463 JQ656464 JQ656465 JQ656466 JQ656467 JQ656468 JQ656469 JQ656470 JQ656471 JQ656472 JQ656473 JQ656474 JQ656475 JQ656476 JQ656477 JQ656478 JQ656479 JQ656480 JQ656481 JQ656482 JQ656483 JQ656484 JQ656485 JQ656486 JQ656487 JQ656488 JQ656489 JQ656490 JQ656491 JQ656492 JQ656493 JQ656494 JQ656495 JQ656496 JQ656497 JQ656498 JQ656499 JQ656500 JQ656501 JQ656502 JQ656503 JQ656504 JQ656505 JQ656506 JQ656507 JQ656508 JQ656509 JQ656510 JQ656511 JQ656512 JQ656513 JQ656514 JQ656515 JQ656516 JQ656517 JQ656518 JQ656519 JQ656520 JQ656521 JQ656522 JQ656523 JQ656524 JQ656525 JQ656526 JQ656527 JQ656528 JQ656529 JQ656530 JQ656531 JQ656532 JQ656533 JQ656534 JQ656535 JQ656536 JQ656537 JQ656538 JQ656539 JQ656540 JQ656541 JQ656542 JQ656543 JQ656544 JQ656545 JQ656546 JQ656547 JQ656548 JQ656549 JQ656550 JQ656551 JQ656552 JQ656553 JQ656554 JQ656555 JQ656556 JQ656557 JQ656558 JQ656559 JQ656560 JQ656561 JQ656562 JQ656563 JQ656564 JQ656565 JQ656566 JQ656567 JQ656568 JQ656569 JQ656570 JQ656571 JQ656572 JQ656573 JQ656574 JQ656575 JQ656576 JQ656577 JQ656578 JQ656579 JQ656580 JQ656581 JQ656582 JQ656583 JQ656584 JQ656585 JQ656586 JQ656587 JQ656588 JQ656589 JQ656590 JQ656591 JQ656592 JQ656593 JQ656594 JQ656595 JQ656596 JQ656597 JQ656598 JQ656599 JQ656600 JQ656601 JQ656602 JQ656603 JQ656604 JQ656605 JQ656606 JQ656607 JQ656608 JQ656609 JQ656610 JQ656611 JQ656612 JQ656613 JQ656614 JQ656615 JQ656616 JQ656617 JQ656618 JQ656619 JQ656620 JQ656621 JQ656622 JQ656623 JQ656624 JQ656625 JQ656626 JQ656627 JQ656628 JQ656629 JQ656630 JQ656631 JQ656632 JQ656633 JQ656634 JQ656635 JQ656636 JQ656637 JQ656638 JQ656639 JQ656640 JQ656641 JQ656642 JQ656643 JQ656644 JQ656645 JQ656646 JQ656647 JQ656648 JQ656649 JQ656650 JQ656651 JQ656652 JQ656653 JQ656654 JQ656655 JQ656656 JQ656657 JQ656658 JQ656659 JQ656660 JQ656661 JQ656662 JQ656663 JQ656664 JQ656665 JQ656666 JQ656667 JQ656668 JQ656669 JQ656670 JQ656671 JQ656672 JQ656673 JQ656674 JQ656675 JQ656676 JQ656677 JQ656678 JQ656679 JQ656680 JQ656681 JQ656682 JQ656683 JQ656684 JQ656685 JQ656686 JQ656687 JQ656688 JQ656689 JQ656690 JQ656691 JQ656692 JQ656693 JQ656694 JQ656695 JQ656696 JQ656697 JQ656698 JQ656699 JQ656700 JQ656701 JQ656702 JQ656703 JQ656704 JQ656705 JQ656706 JQ656707 JQ656708 JQ656709 JQ656710 JQ656711 JQ656712 JQ656713 JQ656714 JQ656715 JQ656716 JQ656717 JQ656718 JQ656719 JQ656720 JQ656721 JQ656722 JQ656723 JQ656724 JQ656725 JQ656726 JQ656727 JQ656728 JQ656729 JQ656730 JQ656731 JQ656732 JQ656733 JQ656734 JQ656735 JQ656736 JQ656737 JQ656738 JQ656739 JQ656740 JQ656741 JQ656742 JQ656743 JQ656744 JQ656745 JQ656746 JQ656747 JQ656748 JQ656749 JQ656750 JQ656751 JQ656752 JQ656753 JQ656754 JQ656755 JQ656756 JQ656757 JQ656758 JQ656759 JQ656760 JQ656761 JQ656762 JQ656763 JQ656764 JQ656765 JQ656766 JQ656767 JQ656768 JQ656769 JQ656770 JQ656771 JQ656772 JQ656773 JQ656774 JQ656775 JQ656776 JQ656777 JQ656778 JQ656779 JQ656780 JQ656781 JQ656782 JQ656783 JQ656784 JQ656785 JQ656786 JQ656787 JQ656788 JQ656789 JQ656790 JQ656791 JQ656792 JQ656793 JQ656794 JQ656795 JQ656796 JQ656797 JQ656798 JQ656799 JQ656800 JQ656801 JQ656802 JQ656803 JQ656804 JQ656805 JQ656806 JQ656807 JQ656808 JQ656809 JQ656810 JQ656811 JQ656812 JQ656813 JQ656814 JQ656815 JQ656816 JQ656817 JQ656818 JQ656819 JQ656820 JQ656821 JQ656822 JQ656823 JQ656824 JQ656825 JQ656826 JQ656827 JQ656828 JQ656829 JQ656830 JQ656831 JQ656832 JQ656833 JQ656834 JQ656835 JQ656836 JQ656837 JQ656838 JQ656839 JQ656840 JQ656841 JQ656842 JQ656843 JQ656844 JQ656845 JQ656846 JQ656847 JQ656848 JQ656849 JQ656850 JQ656851 JQ656852 JQ656853 JQ656854 JQ656855 JQ656856 JQ656857 JQ656858 JQ656859 JQ656860 JQ656861 JQ656862 JQ656863 JQ656864 JQ656865 JQ656866 JQ656867 JQ656868 JQ656869 JQ656870 JQ656871 JQ656872 JQ656873 JQ656874 JQ656875 JQ656876 JQ656877 JQ656878 JQ656879 JQ656880 JQ656881 JQ656882 JQ656883 JQ656884 JQ656885 JQ656886 JQ656887 JQ656888 JQ656889 JQ656890 JQ656891 JQ656892 JQ656893 JQ656894 JQ656895 JQ656896 JQ656897 JQ656898 JQ656899 JQ656900 JQ656901 JQ656902 JQ656903 JQ656904 JQ656905 JQ656906 JQ656907 JQ656908 JQ656909 JQ656910 JQ656911 JQ656912 JQ656913 JQ656914 JQ656915 JQ656916 JQ656917 JQ656918 JQ656919 JQ656920 JQ656921 JQ656922 JQ656923 JQ656924 JQ656925 JQ656926 JQ656927 JQ656928 JQ656929 JQ656930 JQ656931 JQ656932 JQ656933 JQ656934 JQ656935 JQ656936 JQ656937 JQ656938 JQ656939 JQ656940 JQ656941 JQ656942 JQ656943 JQ656944 JQ656945 JQ656946 JQ656947 JQ656948 JQ656949 JQ656950 JQ656951 JQ656952 JQ656953 JQ656954 JQ656955 JQ656956 JQ656957 JQ656958 JQ656959 JQ656960 JQ656961 JQ656962 JQ656963 JQ656964 JQ656965 JQ656966 JQ656967 JQ656968 JQ656969 JQ656970 JQ656971 JQ656972 JQ656973 JQ656974 JQ656975 JQ656976 JQ656977 JQ656978 JQ656979 JQ656980 JQ656981 JQ656982 JQ656983 JQ656984 JQ656985 JQ656986 JQ656987 JQ656988 JQ656989 JQ656990 JQ656991 JQ656992 JQ656993 JQ656994 JQ656995 JQ656996 JQ656997 JQ656998 JQ656999 JQ657000 JQ657001 JQ657002 JQ657003 JQ657004 JQ657005 JQ657006 JQ657007 JQ657008 JQ657009 JQ657010 JQ657011 JQ657012 JQ657013 JQ657014 JQ657015 JQ657016 JQ657017 JQ657018 JQ657019 JQ657020 JQ657021 JQ657022 JQ657023 JQ657024 JQ657025 JQ657026 JQ657027 JQ657028 JQ657029 JQ657030 JQ657031 JQ657032 JQ657033 JQ657034 JQ657035 JQ657036 JQ657037 JQ657038 JQ657039 JQ657040 JQ657041 JQ657042 JQ657043 JQ657044 JQ657045 JQ657046 JQ657047 JQ657048 JQ657049 JQ657050 JQ657051 JQ657052 JQ657053 JQ657054 JQ657055 JQ657056 JQ657057 JQ657058 JQ657059 JQ657060 JQ657061 JQ657062 JQ657063 JQ657064 JQ657065 JQ657066 JQ657067 JQ657068 JQ657069 JQ657070 JQ657071 JQ657072 JQ657073 JQ657074 JQ657075 JQ657076 JQ657077 JQ657078 JQ657079 JQ657080 JQ657081 JQ657082 JQ657083 JQ657084 JQ657085 JQ657086 JQ657087 JQ657088 JQ657089 JQ657090 JQ657091 JQ657092 JQ657093 JQ657094 JQ657095 JQ657096 JQ657097 JQ657098 JQ657099 JQ657100 JQ657101 JQ657102 JQ657103 JQ657104 JQ657105 JQ657106 JQ657107 JQ657108 JQ657109 JQ657111 JQ657112 JQ657113 JQ657114 JQ657115 JQ657116 JQ657117 JQ657118 JQ657119 JQ657120 JQ657121 JQ657122 JQ657123 JQ657124 JQ657125 JQ657126 JQ657127 JQ657128 JQ657129 JQ657130 JQ657131 JQ657132 JQ657133 JQ657134 JQ657135 JQ657136 JQ657137 JQ657138 JQ657139 JQ657140 JQ657141 JQ657142 JQ657143 JQ657144 JQ657145 JQ657146 JQ657147 JQ657148 JQ657149 JQ657150 JQ657151 JQ657152 JQ657153 JQ657154 JQ657155 JQ657156 JQ657157 JQ657158 JQ657159 JQ657160 JQ657161 JQ657162 JQ657163 JQ657164 JQ657165 JQ657166 JQ657167 JQ657168 JQ657169 JQ657170 JQ657171 JQ657172 JQ657173 JQ657174 JQ657175 JQ657176 JQ657177 JQ657178 JQ657179 JQ657180 JQ657181 JQ657182 JQ657183 JQ657184 JQ657185 JQ657186 JQ657187 JQ657188 JQ657189 JQ657190 JQ657191 JQ657192 JQ657193 JQ657194 JQ657195 JQ657196 JQ657197 JQ657198 JQ657199 JQ657200 JQ657201 JQ657202 JQ657203 JQ657204 JQ657205 JQ657206 JQ657207 JQ657208 JQ657209 JQ657210 JQ657211 JQ657212 JQ657213 JQ657214 JQ657215 JQ657216 JQ657217 JQ657218 JQ657219 JQ657220 JQ657221 JQ657110 JQ656330 JQ656331 JQ656332 JQ656333 JQ656334 JQ656335 JQ656336 JQ656337 JQ656338 JQ656339 JQ656340 JQ656341 JQ656342 JQ656343
Strain Wild Core Collection -
Induced Mutation Lines(NIG Collection) -
Sterile Seed Strain -
Lethal Embryo
Mutantion Strain
-
Stages in Each Organ
- Muant Lines (Gene)
-
Cultivated Varieties(NIG Collection) -
Stages in Each Organ -
/rice/oryzabase