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| 著者 | Yilmaz,A., Nishiyama,M.Y. Jr., Fuentes,B.G., Souza,G.M., Janies,D., Gray,J. and Grotewold,E. | |
| タイトル | GRASSIUS: a platform for comparative regulatory genomics across the grasses | |
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Abstract: Transcription factors (TFs) are major players in gene regulatory networks and interactions between TFs and their target genes furnish spatiotemporal patterns of gene expression. Establishing the architecture of regulatory networks requires gathering information on TFs, their targets in the genome, and the corresponding binding sites. We have developed GRASSIUS (Grass Regulatory Information Services) as a knowledge-based Web resource that integrates information on TFs and gene promoters across the grasses. In its initial implementation, GRASSIUS consists of two separate, yet linked, databases. GrassTFDB holds information on TFs from maize (Zea mays), sorghum (Sorghum bicolor), sugarcane (Saccharum spp.), and rice (Oryza sativa). TFs are classified into families and phylogenetic relationships begin to uncover orthologous relationships among the participating species. This database also provides a centralized clearinghouse for TF synonyms in the grasses. GrassTFDB is linked to the grass TFome collection, which provides clones in recombination-based vectors corresponding to full-length open reading frames for a growing number of grass TFs. GrassPROMDB contains promoter and cis-regulatory element information for those grass species and genes for which enough data are available. The integration of GrassTFDB and GrassPROMDB will be accomplished through GrassRegNet as a first step in representing the architecture of grass regulatory networks. GRASSIUS can be accessed from www.grassius.org. |
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| 掲載誌 | Plant Physiol. | |
| Country | USA | |
| 刊数 | 149(1) | |
| ページ | 171-180 | |
| 発刊年 | 2009 | |
| PubMed ID | 18987217 | |
| PubMed Central ID | - | |
| DOI | 10.1104/pp.108.128579 | |
| URL | - | |
| 関連情報 | ||
| 遺伝子 | 2R_MYB2 2R_MYB73 ARID1 BBX6 BHLH083 BHLH1 BHLH148 BHLH31 BHLH44 BHLH59 BHLH60 BHLH98 BRD2 BSRD1 BZIP42 BZIP63 C3H32 DLN17 DLN231 DOF5 DOS DPF DRAP1 E2F1 EHD3 EIL2 ERF33 ERF50 HMGB707 HSFB1 ICE2 LFS LIP19 PLT2 RAI1 RNG1 SAP16 SGSD3 SPL4 TIFY6A WRKY10 WRKY11 WRKY121 WRKY19 WRKY26 WRKY47 WRKY51 WRKY67 WRKY69 WRKY72 WRKY87 ZFP15 ZFP182 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| INSD | HQ858872 HQ858873 HQ858874 HQ858875 HQ858876 HQ858877 HQ858878 HQ858863 HQ858802 HQ858803 HQ858804 HQ858805 HQ858806 HQ858807 HQ858808 HQ858809 HQ858810 HQ858811 HQ858812 HQ858813 HQ858814 HQ858815 HQ858816 HQ858817 HQ858818 HQ858819 HQ858820 HQ858821 HQ858822 HQ858823 HQ858824 HQ858825 HQ858826 HQ858827 HQ858828 HQ858829 HQ858830 HQ858831 HQ858832 HQ858833 HQ858834 HQ858835 HQ858836 HQ858837 HQ858838 HQ858839 HQ858840 HQ858841 HQ858842 HQ858843 HQ858844 HQ858845 HQ858846 HQ858847 HQ858848 HQ858849 HQ858850 HQ858851 HQ858852 HQ858853 HQ858854 HQ858855 HQ858856 HQ858857 HQ858858 HQ858859 HQ858860 HQ858861 HQ858862 HQ858864 HQ858865 HQ858866 HQ858867 HQ858868 HQ858869 HQ858870 HQ858871 | |
| 系統 |
野生イネ コアコレクション |
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| 突然変異系統(遺伝研 Collection) | - | |
| 種子不稔系統 | - | |
| 致死変異体系統 | - | |
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組織別発生段階 - 突然変異系統(遺伝子) |
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| 栽培イネ品種(遺伝研 Collection) | - | |
| 組織別発生段階 | - | |
