Update info.Tools - Reference - Detail
Reference Detail
| Reference | ||
|---|---|---|
| Author | Ma H,Zhao J | |
| Title | Genome-wide identification, classification, and expression analysis of the arabinogalactan protein gene family in rice (Oryza sativa L.). | |
|
Abstract: Arabinogalactan proteins (AGPs) comprise a family of hydroxyproline-rich glycoproteins that are implicated in plant growth and development. In this study, 69 AGPs are identified from the rice genome, including 13 classical AGPs, 15 arabinogalactan (AG) peptides, three non-classical AGPs, three early nodulin-like AGPs (eNod-like AGPs), eight non-specific lipid transfer protein-like AGPs (nsLTP-like AGPs), and 27 fasciclin-like AGPs (FLAs). The results from expressed sequence tags, microarrays, and massively parallel signature sequencing tags are used to analyse the expression of AGP-encoding genes, which is confirmed by real-time PCR. The results reveal that several rice AGP-encoding genes are predominantly expressed in anthers and display differential expression patterns in response to abscisic acid, gibberellic acid, and abiotic stresses. Based on the results obtained from this analysis, an attempt has been made to link the protein structures and expression patterns of rice AGP-encoding genes to their functions. Taken together, the genome-wide identification and expression analysis of the rice AGP gene family might facilitate further functional studies of rice AGPs. |
||
| Journal | J. Exp. Bot. | |
| Country | China | |
| Volume | 61(10) | |
| Pages | 2647-68 | |
| Year | 2010 | |
| PubMed ID | 20423940 | |
| PubMed Central ID | - | |
| DOI | 10.1093/jxb/erq104 | |
| URL | - | |
| Relation | ||
| Gene | AGP1 AGP10 AGP11 AGP12 AGP13 AGP15 AGP16 AGP17 AGP18 AGP2 AGP20 AGP21 AGP22 AGP23 AGP24 AGP25 AGP26 AGP27 AGP28 AGP29 AGP3 AGP30 AGP31 AGP4 AGP5 AGP6 AGP7 AGP8 AGP9 AGPEP1 AGPEP2 ENODL1 ENODL18 ENODL6 FLA1 FLA10 FLA11 FLA12 FLA13 FLA14 FLA15 FLA16 FLA17 FLA18 FLA19 FLA2 FLA20 FLA21 FLA22 FLA23 FLA24 FLA25 FLA26 FLA27 FLA3 FLA4 FLA5 FLA6 FLA7 FLA8 FLA9 _ _ _ _ _ _ _ _ | |
| INSD | - | |
| Strain | Wild Core Collection | - |
| Induced Mutation Lines(NIG Collection) | - | |
| Sterile Seed Strain | - | |
|
Lethal Embryo Mutantion Strain |
- | |
|
Stages in Each Organ - Muant Lines (Gene) |
- | |
| Cultivated Varieties(NIG Collection) | - | |
| Stages in Each Organ | - | |
