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Reference Detail
| Reference | ||
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| Author | Asano T, Tanaka N, Yang G, Hayashi N, Komatsu S. | |
| Title | Genome-wide identification of the rice calcium-dependent protein kinase and its closely related kinase gene families: comprehensive analysis of the CDPKs gene family in rice. | |
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Abstract: In plants, calcium acts as a universal second messenger in various signal transduction pathways. The plant-specific calcium-dependent protein kinases (CDPKs) play important roles regulating downstream components of calcium signaling. We conducted a genome-wide analysis of rice CDPKs and identified 29 CDPK genes and eight closely related kinase genes, including five CDPK-related kinases (CRKs), one calcium and calmodulin-dependent protein kinase (CCaMK) and two phosphoenolpyruvate (PEP) carboxylase kinase-related kinases (PEPRKs). The mRNA splicing sites of the rice CDPKs, CRKs and PEPRKs (but not OsCCaMK) are highly conserved, suggesting that these kinases are derived from a common ancestor. RNA gel blot analyses revealed that the majority of rice CDPK genes exhibited tissue-specific expression. Expression of OsCPK9 was elevated in seedlings infected by rice blast, indicating that this gene plays an important role in signaling in response to rice blast treatment. Our genomic and bioinformatic analyses will provide an important foundation for further functional dissection of the rice CDPK gene family. |
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| Journal | Plant Cell Physiol. | |
| Country | Japan | |
| Volume | 46(2) | |
| Pages | 356-66 | |
| Year | 2005 | |
| PubMed ID | 15695435 | |
| PubMed Central ID | - | |
| DOI | 10.1093/pcp/pci035 | |
| URL | - | |
| Relation | ||
| Gene | CDPK1 CDPK10 CDPK11 CDPK13 CDPK14 CDPK15 CDPK16 CDPK17 CDPK18 CDPK19 CDPK2 CDPK20 CDPK21 CDPK22 CDPK24 CDPK25 CDPK26 CDPK27 CDPK28 CDPK29 CDPK3 CDPK30 CDPK31 CDPK4 CDPK5 CDPK6 CDPK7 CDPK8 CDPK9 CRK1 CRK2 CRK3 CRK4 CRK5 DMI3 ESL4 SPK _ _ | |
| INSD | - | |
| Strain | Wild Core Collection | - |
| Induced Mutation Lines(NIG Collection) | - | |
| Sterile Seed Strain | - | |
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Lethal Embryo Mutantion Strain |
- | |
|
Stages in Each Organ - Muant Lines (Gene) |
- | |
| Cultivated Varieties(NIG Collection) | - | |
| Stages in Each Organ | - | |
