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Reference Detail
| Reference | ||
|---|---|---|
| Author | Thirumurugan,T., Ito,Y., Kubo,T., Serizawa,A. and Kurata,N. | |
| Title | Identification, characterization and interaction of HAP family genes in rice | |
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Abstract: A HAP complex, which consists of three subunits, namely HAP2 (also called NF-YA or CBF-B), HAP3 (NF-YB/CBF-A) and HAP5 (NF-YC/CBF-C), binds to CCAAT sequences in a promoter to control the expression of target genes. We identified 10 HAP2 genes, 11 HAP3 genes and 7 HAP5 genes in the rice genome. All the three HAP family genes encode a protein with a conserved domain in each family and various non-conserved regions in both length and amino acid sequence. These genes showed various expression patterns depending on genes, and various combinations of overlapped expression of the HAP2, HAP3 and HAP5 genes were observed. Furthermore, protein interaction analyses showed interaction of OsHAP3A, a ubiquitously expressed HAP3 subunit of rice, with specific members of HAP5. These results indicate that the formation of specific complex with various HAP subunits combinations can be achieved by both tissue specific expression of three subunit genes and specific interaction of three subunit proteins. This may suggest that the HAP complexes may control various aspects of rice growth and development through tissue specific expression and complex formation of three subunit members. |
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| Journal | Mol. Genet. Genomics | |
| Country | Japan | |
| Volume | 279(3) | |
| Pages | 279-289 | |
| Year | 2008 | |
| PubMed ID | 18193457 | |
| PubMed Central ID | - | |
| DOI | 10.1007/s00438-007-0312-3 | |
| URL | - | |
| Relation | ||
| Gene | DRAP1 DRAP2 HAP2A HAP2B HAP2C HAP2D HAP2E HAP2F HAP2G HAP2H HAP2I HAP2J HAP3A HAP3B HAP3C HAP3D HAP3F HAP3G HAP3I HAP3J HAP3K HAP5A HAP5B HAP5C HAP5D HAP5E HAP5F HAP5G HD5 LEC1 | |
| INSD | AB288044 AB288043 AB288042 AB288041 AB288040 AB288039 AB288038 AB288037 AB288036 AB288035 AB288034 AB288033 AB288032 AB288031 AB288030 AB288029 AB288028 AB288027 AB095438 AB095440 AB095439 BR000373 BR000374 AB288046 BR000375 AB288047 AB288048 AB288045 | |
| Strain | Wild Core Collection | - |
| Induced Mutation Lines(NIG Collection) | - | |
| Sterile Seed Strain | - | |
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Lethal Embryo Mutantion Strain |
- | |
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Stages in Each Organ - Muant Lines (Gene) |
- | |
| Cultivated Varieties(NIG Collection) | - | |
| Stages in Each Organ | - | |
