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Author Shimada,H. and Sugiura,M.
Title Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
Abstract:
The entire nucleotide sequences of the rice, tobacco and liverwort chloroplast genomes have been determined. We compared all the chloroplast genes, open reading frames and spacer regions in the plastid genomes of these three species in order to elucidate general structural features of the chloroplast genome. Analyses of homology, GC content and codon usage of the genes enabled us to classify them into two groups: photosynthesis genes and genetic system genes. Based on comparisons of homology, GC content and codon usage, unidentified ORFs can also be assigned to each of these groups such that it is possible to speculate about the functions of products which may be produced by these ORFs. The spacer regions and intron sequences were compared and found to have no obvious homology between rice and liverwort or between tobacco and liverwort.
Journal Nucleic Acids Res.
Country Japan
Volume 19(5)
Pages 983-995
Year 1991
PubMed ID 1708498
PubMed Central ID -
DOI -
URL -
Relation
Gene 16S rRNA 16S rRNA 23S rRNA 23S rRNA 3'RPS12 4.5S rRNA 4.5S rRNA 5S rRNA 5S rRNA CLPP INFA NDHA NDHB NDHB NDHC NDHD NDHE NDHF NDHG NDHH NDHI NDHJ PETA PETD PSAA PSAB PSAC PSBA PSBC PSBD PSBE PSBF PSBH PSBI PSBK PSBL PSBM PSBN RBCL RPL14 RPL16 RPL2 RPL2 RPL22 RPL23 RPL23 RPL32 RPL33 RPL36 RPOA RPOB RPOC1 RPOC2 RPS11 RPS12 RPS14 RPS15 RPS15 RPS16 RPS18 RPS19 RPS2 RPS3 RPS4 RPS7 RPS7 RPS8 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
INSD X15901
Strain Wild Core Collection -
Sterile Seed Strain -
Lethal Embryo
Mutantion Strain
-
Stages in Each Organ
- Muant Lines (Gene)
-
Cultivated Varieties(NIG Collection) -
Stages in Each Organ -
/rice/oryzabase