Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol ARF6A
Gene Symbol Synonym OsARF6a, OsARF6, ARF6
CGSNL Gene Name AUXIN RESPONSE FACTOR 6A
Gene Name Synonym auxin response factor-6a, auxin response factor 6a, auxin response factor-6, auxin response factor 6, auxin responsive factor 6
Protein Name AUXIN RESPONSE FACTOR 6A
Allele osarf6
Chromosome No. 2
Explanation AB071294, Q6H6V4. GO:0140272: exogenous protein binding. GO:2000652: regulation of secondary cell wall biogenesis. TO:0000993: cellulose content. GO:2001008: positive regulation of cellulose biosynthetic process.
Trait Class Vegetative organ - Leaf
Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
Other
Expression
Sequence/Locus
cDNA Accession No. AK066725
AK070569
MSU ID LOC_Os02g06910.1
RAP ID Os02g0164900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Huang G., Hu H., van de Meene A., Zhang J., Dong L., Zheng S., Zhang F., Betts N.S., Liang W., Bennett M.J., Persson S., Zhang D.
Plant Cell 2021  33(9)  3120-3133
AUXIN RESPONSE FACTORS 6 and 17 control the flag leaf angle in rice by regulating secondary cell wall biosynthesis of lamina joints.
Zhang H., Li L., He Y., Qin Q., Chen C., Wei Z., Tan X., Xie K., Zhang R., Hong G., Li J., Li J., Yan C., Yan F., Li Y., Chen J., Sun Z.
Proc. Natl. Acad. Sci. U.S.A. 2020  117(16)  9112-9121
Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.
Ni J.a b, Zhu Z.b c, Wang G.c, Shen Y.a, Zhang Y.a, Wu P.b
PLoS ONE 2014  9 
Intragenic suppressor of Osiaa23 revealed a conserved Tryptophan residue crucial for protein-protein interactions
Shen C,Wang S,Bai Y,Wu Y,Zhang S,Chen M,Guilfoyle TJ,Wu P,Qi Y
J. Exp. Bot. 2010  61(14)  3971-81
Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.
Gene 2007  394(1-2)  13-24
Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
Ji Hyun Yang, So Jeong Han, Eun Kyung Yoon, Woo Sung Lee
Nucleic Acids Res. 2006  34(6)  1892-9
'Evidence of an auxin signal pathway, MicroRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'.
Y Sato, A Nishimura, M Ito, M Ashikari, H Y Hirano, M Matsuoka
Genes Genet. Syst. 2001  76(6)  373-80
Auxin response factor family in rice.
TextPresso Search Search textpresso for ARF6A ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology cellulose biosynthetic process( GO:0030244 )
lignin metabolic process( GO:0009808 )
secondary cell wall biogenesis( GO:0009834 )
response to auxin stimulus( GO:0009733 )
DNA binding( GO:0003677 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
auxin mediated signaling pathway( GO:0009734 )
flower development( GO:0009908 )
defense response to fungus( GO:0050832 )
Trait Ontology blast disease( TO:0000074 )
flag leaf angle( TO:0000124 )
auxin sensitivity( TO:0000163 )
leaf lamina joint bending( TO:0002688 )
grain yield( TO:0000396 )
lignin content( TO:0000731 )
Plant Ontology flag leaf( PO:0020103 )
leaf lamina( PO:0020039 )
Related Strains
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Phenotype images
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Last updated
Mar 2, 2022


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