Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol ARF6A
Gene Symbol Synonym OsARF6a, OsARF6, ARF6
Gene Name Synonym auxin response factor-6a, auxin response factor 6a, auxin response factor-6, auxin response factor 6, auxin responsive factor 6
Allele osarf6, osarf6-1, osarf6-2, osarf6-3, osarf6-4
Chromosome No. 2
Explanation AB071294, Q6H6V4. GO:0140272: exogenous protein binding. GO:2000652: regulation of secondary cell wall biogenesis. TO:0000993: cellulose content. GO:2001008: positive regulation of cellulose biosynthetic process. TO:0020100: nitrate uptake. GO:1902025: nitrate import. TO:0020098: nitrate sensitivity. GO:1901698: response to nitrogen compound.
Trait Class Tolerance and resistance - Disease resistance
Vegetative organ - Leaf
Character as QTL - Yield and productivity
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
cDNA Accession No. AK070569
MSU ID LOC_Os02g06910.1
RAP ID Os02g0164900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Ma F., Zhang F., Zhu Y., Lan D., Yan P., Wang Y., Hu Z., Zhang X., Hu J., Niu F., Liu M., He S., Cui J., Yuan X., Yan Y., Wu S., Cao L., Bian H., Yang J., Li Z., Luo X.
J Integr Plant Biol 2023  65(7)  1753-1766
Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.
Suzuki G., Fukuda M., Lucob-Agustin N., Inukai Y., Gomi K.
Plants (Basel) 2022  11(12) 
The Mutation of Rice MEDIATOR25, OsMED25, Induces Rice Bacterial Blight Resistance through Altering Jasmonate- and Auxin-Signaling.
Qiao J., Jiang H., Lin Y., Shang L., Wang M., Li D., Fu X., Geisler M., Qi Y., Gao Z., Qian Q.
Mol Plant 2021   
A novel miR167a-OsARF6-OsAUX3 module regulates grain length and weight in rice.
Huang G., Hu H., van de Meene A., Zhang J., Dong L., Zheng S., Zhang F., Betts N.S., Liang W., Bennett M.J., Persson S., Zhang D.
Plant Cell 2021  33(9)  3120-3133
AUXIN RESPONSE FACTORS 6 and 17 control the flag leaf angle in rice by regulating secondary cell wall biosynthesis of lamina joints.
Zhang H., Li L., He Y., Qin Q., Chen C., Wei Z., Tan X., Xie K., Zhang R., Hong G., Li J., Li J., Yan C., Yan F., Li Y., Chen J., Sun Z.
Proc. Natl. Acad. Sci. U.S.A. 2020  117(16)  9112-9121
Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.
Zhang S., Zhu L., Shen C., Ji Z., Zhang H., Zhang T., Li Y., Yu J., Yang N., He Y., Tian Y., Wu K., Wu J., Harberd N.P., Zhao Y., Fu X., Wang S., Li S.
Plant Cell 2020   
Natural allelic variation in a modulator of auxin homeostasis improves grain yield and nitrogen use efficiency in rice.
Ni J.a b, Zhu Z.b c, Wang G.c, Shen Y.a, Zhang Y.a, Wu P.b
PLoS ONE 2014  9 
Intragenic suppressor of Osiaa23 revealed a conserved Tryptophan residue crucial for protein-protein interactions
Shen C,Wang S,Bai Y,Wu Y,Zhang S,Chen M,Guilfoyle TJ,Wu P,Qi Y
J. Exp. Bot. 2010  61(14)  3971-81
Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.
Gene 2007  394(1-2)  13-24
Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
Ji Hyun Yang, So Jeong Han, Eun Kyung Yoon, Woo Sung Lee
Nucleic Acids Res. 2006  34(6)  1892-9
'Evidence of an auxin signal pathway, MicroRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'.
Y Sato, A Nishimura, M Ito, M Ashikari, H Y Hirano, M Matsuoka
Genes Genet. Syst. 2001  76(6)  373-80
Auxin response factor family in rice.
TextPresso Search Search textpresso for ARF6A ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to ammonium ion( GO:0060359 )
response to nitrate( GO:0010167 )
defense response to fungus( GO:0050832 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
response to auxin stimulus( GO:0009733 )
secondary cell wall biogenesis( GO:0009834 )
lignin metabolic process( GO:0009808 )
cellulose biosynthetic process( GO:0030244 )
negative regulation of unidimensional cell growth( GO:0051511 )
DNA binding( GO:0003677 )
regulation of transcription, DNA-dependent( GO:0006355 )
auxin mediated signaling pathway( GO:0009734 )
flower development( GO:0009908 )
Trait Ontology blast disease( TO:0000074 )
grain weight( TO:0000590 )
grain length( TO:0000734 )
grain size( TO:0000397 )
auxin content( TO:0002672 )
1000-seed weight( TO:0000382 )
seed length to width ratio( TO:0000411 )
flag leaf angle( TO:0000124 )
auxin sensitivity( TO:0000163 )
leaf lamina joint bending( TO:0002688 )
grain yield( TO:0000396 )
lignin content( TO:0000731 )
plant height( TO:0000207 )
tillering ability( TO:0000329 )
tiller number( TO:0000346 )
Plant Ontology flag leaf( PO:0020103 )
leaf lamina( PO:0020039 )
primary root tip( PO:0000026 )
lateral root( PO:0020121 )
stem( PO:0009047 )
leaf( PO:0025034 )
pulvinus( PO:0009000 )
glume( PO:0009039 )
flower( PO:0009046 )
anther septum( PO:0005010 )
Related Strains
Phenotype images
Last updated
Oct 12, 2023