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Basic Information
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CGSNL Gene Symbol
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ARF2
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Gene Symbol Synonym
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OsARF2, OsARF4, ARF4
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CGSNL Gene Name
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AUXIN RESPONSE FACTOR 2
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Gene Name Synonym
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auxin response factor-2, auxin response factor 2, auxin response factor-4, auxin response factor 4
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Protein Name
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AUXIN RESPONSE FACTOR 2
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Allele
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arf4-5, arf4-5a, arf4-5b, arf4-8
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Chromosome No.
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1
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Explanation
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AB071293, Q5JK20. OsARF4 in Hu et al. 2018, Sun et al. 2017, Guo et al. 2019, Li et al. 2021, Ma et al. 2023. GEO DataSets: GSE98924. GO:1990110: callus formation.
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Trait Class
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Seed - Morphological traits
Other
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK072309
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MSU ID
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LOC_Os01g70270.1
LOC_Os01g70270.2
LOC_Os01g70270.3
LOC_Os01g70270.4
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RAP ID
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Os01g0927600
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Ma M., Shen S.Y., Bai C., Wang W.Q., Feng X.H., Ying J.Z., Song X.J.
Cell Rep 2023 42(3) 112187
Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling.
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Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.
Commun Biol 2023 6(1) 457
Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.
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Li Y., Liu P., Mei L., Jiang G., Lv Q., Zhai W., Li C.
Front Plant Sci 2022 13 1065253
Knockout of a papain-like cysteine protease gene <i>OCP</i> enhances blast resistance in rice.
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Li M., Fu D., Xu T., Wu C.
Int J Mol Sci 2021 22(15)
<i>VPB1</i> Encoding BELL-like homeodomain Protein Is Involved in Rice Panicle Architecture.
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Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020 101(6) 1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
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Li Y., Yang Y., Liu Y., Li D., Zhao Y., Li Z., Liu Y., Jiang D., Li J., Zhou H., Chen J., Zhuang C., Liu Z.
Rice (N Y) 2019 12(1) 60
Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.
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Guo T., Chen K., Dong N.Q., Ye W.W., Shan J.X., Lin H.X.
J Integr Plant Biol 2019
Tillering and small grain 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.
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Hu Z., Lu S.J., Wang M.J., He H., Sun L., Wang H., Liu X.H., Jiang L., Sun J.L., Xin X., Kong W., Chu C., Xue H.W., Yang J., Luo X., Liu J.X.
Mol Plant 2018 11(5) 736-749
A Novel QTL qTGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate grain size and Weight in Rice.
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Sun W., Gao D., Xiong Y., Tang X., Xiao X., Wang C., Yu S.
Mol Plant 2017 10(11) 1417-1433
Hairy Leaf 6, an AP2/ERF Transcription Factor, Interacts with OsWOX3B and Regulates Trichome Formation in Rice.
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Shen C,Wang S,Bai Y,Wu Y,Zhang S,Chen M,Guilfoyle TJ,Wu P,Qi Y
J. Exp. Bot. 2010 61(14) 3971-81
Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
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Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.
Gene 2007 394(1-2) 13-24
Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
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Y Sato, A Nishimura, M Ito, M Ashikari, H Y Hirano, M Matsuoka
Genes Genet. Syst. 2001 76(6) 373-80
Auxin response factor family in rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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brassinosteroid mediated signaling( GO:0009742 )
DNA binding( GO:0003677 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
seed development( GO:0048316 )
regulation of auxin mediated signaling pathway( GO:0010928 )
auxin mediated signaling pathway( GO:0009734 )
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Trait Ontology
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grain size( TO:0000397 )
grain weight( TO:0000590 )
seed development trait( TO:0000653 )
callus induction( TO:0000428 )
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Plant Ontology
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seed development stage( PO:0001170 )
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Related Strains
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Phenotype images
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Last updated
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Oct 5, 2023
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Update info.