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Detail of Gene

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Basic Information
CGSNL Gene Symbol ARF6B
Gene Symbol Synonym OsARF6b, OsARF25, ARF25
Gene Name Synonym auxin response factor-6B, auxin response factor 6B, auxin response factor-25, auxin response factor 25
Allele osarf25, arf25-1, arf25-3
Chromosome No. 12
Explanation AB071295, Q2QM84. OsARF25 in Ni et al. 2014, Zhao et al. 2014, Zhang et al. 2019, Zhao et al. 2019, Li et al. 2020, Zhang et al. 2020, Huang et al. 2021, Li et al. 2021, Suzuki et al. 2022, Zhang et al. 2020. GO:2000012: regulation of auxin polar transport. GO:0140272: exogenous protein binding. GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity. TO:0020100: nitrate uptake. GO:1902025: nitrate import.
Trait Class Seed - Morphological traits - Grain shape
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
cDNA Accession No. AK121703
MSU ID LOC_Os12g41950.1
RAP ID Os12g0613700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Suzuki G., Fukuda M., Lucob-Agustin N., Inukai Y., Gomi K.
Plants (Basel) 2022  11(12) 
The Mutation of Rice MEDIATOR25, OsMED25, Induces Rice Bacterial Blight Resistance through Altering Jasmonate- and Auxin-Signaling.
Huang G., Hu H., van de Meene A., Zhang J., Dong L., Zheng S., Zhang F., Betts N.S., Liang W., Bennett M.J., Persson S., Zhang D.
Plant Cell 2021  33(9)  3120-3133
AUXIN RESPONSE FACTORS 6 and 17 control the flag leaf angle in rice by regulating secondary cell wall biosynthesis of lamina joints.
Li M., Fu D., Xu T., Wu C.
Int J Mol Sci 2021  22(15) 
<i>VPB1</i> Encoding BELL-like homeodomain Protein Is Involved in Rice Panicle Architecture.
Li Y., Li J., Chen Z., Wei Y., Qi Y., Wu C.
Plant Biotechnol. J. 2020   
OsmiR167a-targeted auxin response factors modulate tiller angle via fine-tuning auxin distribution in rice.
Mao C., He J., Liu L., Deng Q., Yao X., Liu C., Qiao Y., Li P., Ming F.
Plant Biotechnol. J. 2020  18(2)  429-442
OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.
Zhang S., Zhu L., Shen C., Ji Z., Zhang H., Zhang T., Li Y., Yu J., Yang N., He Y., Tian Y., Wu K., Wu J., Harberd N.P., Zhao Y., Fu X., Wang S., Li S.
Plant Cell 2020   
Natural allelic variation in a modulator of auxin homeostasis improves grain yield and nitrogen use efficiency in rice.
Zhang H., Li L., He Y., Qin Q., Chen C., Wei Z., Tan X., Xie K., Zhang R., Hong G., Li J., Li J., Yan C., Yan F., Li Y., Chen J., Sun Z.
Proc. Natl. Acad. Sci. U.S.A. 2020  117(16)  9112-9121
Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.
Zhao Z.X., Feng Q., Cao X.L., Zhu Y., Wang H., Chandran V., Fan J., Zhao J.Q., Pu M., Li Y., Wang W.M.
J Integr Plant Biol 2019   
Osa-miR167d facilitates infection of Magnaporthe oryzae in rice.
Zhang Z., Li J., Tang Z., Sun X., Zhang H., Yu J., Yao G., Li G., Guo H., Li J., Wu H., Huang H., Xu Y., Yin Z., Qi Y., Huang R., Yang W., Li Z.
J. Exp. Bot. 2018  69(20)  4723-4737
Gnp4/LAX2, a RAWUL protein, interferes with the OsIAA3-OsARF25 interaction to regulate grain length via the auxin signaling pathway in rice.
Yu J., Zao W., He Q., Kim T.S., Park Y.J.
Mol. Genet. Genomics 2017   
Genome-wide association study and gene set analysis for understanding candidate genes involved in salt tolerance at the rice seedling stage.
Wang S., Zhang S., Sun C., Xu Y., Chen Y., Yu C., Qian Q., Jiang D.A., Qi Y.
New Phytol. 2014  201(1)  91-103
Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
Zhao F.Y.a, Han M.M.a, Zhang S.Y.b, Ren J.a, Hu F.a, Wang X.a
Russian Journal of Plant Physiology 2014  61  608-618
MAPKs as a cross point in H2O2 and auxin signaling under combined cadmium and zinc stress in rice roots
Ni J.a b, Zhu Z.b c, Wang G.c, Shen Y.a, Zhang Y.a, Wu P.b
PLoS ONE 2014  9 
Intragenic suppressor of Osiaa23 revealed a conserved Tryptophan residue crucial for protein-protein interactions
Gao S., Fang J., Xu F., Wang W., Sun X., Chu J., Cai B., Feng Y., Chu C.
Plant Physiol. 2014  165(3)  1035-1046
CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice crown root Formation.
Qi Y., Wang S., Shen C., Zhang S., Chen Y., Xu Y., Liu Y., Wu Y., Jiang D.
New Phytol. 2012  193(1)  109-20
OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
Shen C,Wang S,Bai Y,Wu Y,Zhang S,Chen M,Guilfoyle TJ,Wu P,Qi Y
J. Exp. Bot. 2010  61(14)  3971-81
Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.
Gene 2007  394(1-2)  13-24
Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
Y Sato, A Nishimura, M Ito, M Ashikari, H Y Hirano, M Matsuoka
Genes Genet. Syst. 2001  76(6)  373-80
Auxin response factor family in rice.
TextPresso Search Search textpresso for ARF6B ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to ammonium ion( GO:0060359 )
response to nitrate( GO:0010167 )
flower development( GO:0009908 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
DNA binding( GO:0003677 )
auxin polar transport( GO:0009926 )
response to auxin stimulus( GO:0009733 )
gravitropism( GO:0009630 )
response to hormone stimulus( GO:0009725 )
regulation of transcription, DNA-dependent( GO:0006355 )
auxin mediated signaling pathway( GO:0009734 )
response to salt stress( GO:0009651 )
defense response to fungus( GO:0050832 )
Trait Ontology plant growth hormone sensitivity( TO:0000401 )
salt tolerance( TO:0006001 )
auxin sensitivity( TO:0000163 )
grain length( TO:0000734 )
blast disease( TO:0000074 )
plant height( TO:0000207 )
tiller angle( TO:0000567 )
gravity response trait( TO:0002693 )
Plant Ontology leaf( PO:0025034 )
root( PO:0009005 )
leaf lamina( PO:0020039 )
Related Strains
Phenotype images
Last updated
Mar 15, 2023