Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SIP25
Gene Symbol Synonym OsSIP25, OsTMF, TMF
CGSNL Gene Name SKIP INTERACTING PROTEIN 25
Gene Name Synonym SKIP interacting protein 25, SKIPa-interacting protein 25, SKIPa-interacting protein 25, TATA modulatory factor
Protein Name SKIP INTERACTING PROTEIN 25
Allele ostmf-1, ostmf-2
Chromosome No. 5
Explanation EU368715. a homologue of the human TATA modulatory factor (TMF). the candidate gene of qGRG3-2 (QTL for germination rate grades on the 3rd day) on chromosome 5, GO:0001216: DNA-binding transcription activator activity. TO:0000993: cellulose content. TO:0000931: seed quality trait.
Trait Class Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Other
Expression
Sequence/Locus
cDNA Accession No. AK062036
MSU ID LOC_Os05g48620.1
RAP ID Os05g0559900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Liu L., Ma Y., Zhao H., Guo L., Guo Y., Liu C.M.
Front Plant Sci 2024  15  1384246
Genome-wide association studies identified <i>OsTMF</i> as a gene regulating rice seed germination under salt stress.
Xu Y., Hu D., Hou X., Shen J., Liu J., Cen X., Fu J., Li X., Hu H., Xiong L.
New Phytol. 2020  227(2)  498-512
OsTMF attenuates cold tolerance by affecting cell wall properties in rice.
Hou X,Xie K,Yao J,Qi Z,Xiong L
Proc. Natl. Acad. Sci. U.S.A. 2009  106  6410-5
A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance.
DB Reference
Gramene ID -
Ontologies
Gene Ontology regulation of transcription, DNA-dependent( GO:0006355 )
plant-type cell wall modification( GO:0009827 )
nucleus( GO:0005634 )
response to cold( GO:0009409 )
positive regulation of transcription, DNA-dependent( GO:0045893 )
cell wall thickening( GO:0052386 )
response to salt stress( GO:0009651 )
Trait Ontology cold tolerance( TO:0000303 )
polysaccharide content( TO:0006007 )
hydrogen peroxide content( TO:0000605 )
salt tolerance( TO:0006001 )
seed development trait( TO:0000653 )
relative plant height( TO:0001034 )
germination rate( TO:0000430 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Jul 4, 2024

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