|
Basic Information
|
|
CGSNL Gene Symbol
|
MIR399D
|
|
Gene Symbol Synonym
|
OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d
|
|
CGSNL Gene Name
|
MICRORNA399D
|
|
Gene Name Synonym
|
microRNA399d, osa-miRNA399d
|
|
Protein Name
|
_
|
|
Allele
|
mir399d
|
|
Chromosome No.
|
6
|
|
Explanation
|
miRBASE accession: MI0001056. LM379300. HM139923-HM139967 (O. sativa, O. rufipogon, O. barthii). a target gene: Os05g0557700. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011) GO:0072732: cellular response to calcium ion starvation. TO:0020102: phosphate content. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:2000377: regulation of reactive oxygen species metabolic process.
|
|
Trait Class
|
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Other
|
|
Expression
|
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
-
|
|
MSU ID
|
-
|
|
RAP ID
|
-
|
|
Links
|
-
|
INSD Accession List
(Test version)
|
-
|
|
Map
|
|
Locate(cM)
|
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Lü S., Yu X., Wu X., Hu Q., Zhu X., Wu M., Hu Q., Zhao S., Hu J., Wu J., Zhang S.
Plant Physiol. 2024
The microRNA399d-PHOSPHATE2 module alters rice sensitivity to rice ragged stunt virus by manipulating phosphate uptake.
|
|
Hu B., Wang W., Deng K., Li H., Zhang Z., Zhang L., Chu C.
Front Plant Sci 2015 6 188
MicroRNA399 is involved in multiple nutrient starvation responses in rice.
|
|
Secco D., Jabnoune M., Walker H., Shou H., Wu P., Poirier Y., Whelan J.
Plant Cell 2013 25(11) 4285-304
Spatio-Temporal Transcript Profiling of Rice Roots and Shoots in Response to Phosphate Starvation and Recovery.
|
|
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
|
|
Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
|
|
Wang,Y., Shen,D., Bo,S., Chen,H., Zheng,J., Zhu,Q.H., Cai,D., Helliwell,C. and Fan,L.
BMC Evol. Biol. 2010 10 119
Sequence variation and selection of small RNAs in domesticated rice
|
|
Wang C,Ying S,Huang H,Li K,Wu P,Shou H
Plant J. 2009 57 895-904
Involvement of OsSPX1 in phosphate homeostasis in rice.
|
|
Wang Z,Hu H,Huang H,Duan K,Wu Z,Wu P
J. Integr. Plant Biol. 2009 51(7) 663-74
Regulation of OsSPX1 and OsSPX3 on expression of OsSPX domain genes and Pi-starvation signaling in rice.
|
|
Bari R, Datt Pant B, Stitt M, Scheible WR.
Plant Physiol. 2006 141(3) 988-99
PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants.
|
|
DB Reference
|
|
Gramene ID
|
-
|
|
Ontologies
|
|
Gene Ontology
|
gene silencing by miRNA( GO:0035195 )
mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
micro-ribonucleoprotein complex( GO:0035068 )
cellular response to phosphate starvation( GO:0016036 )
cellular response to iron ion starvation( GO:0010106 )
cellular response to potassium ion starvation( GO:0051365 )
regulation of defense response to virus( GO:0050688 )
defense response to virus( GO:0051607 )
regulation of innate immune response( GO:0045088 )
phosphate ion homeostasis( GO:0055062 )
|
|
Trait Ontology
|
rice ragged stunt virus resistance( TO:0000386 )
phosphorus uptake( TO:0000511 )
hydrogen peroxide content( TO:0000605 )
phosphorus sensitivity( TO:0000102 )
leaf color( TO:0000326 )
leaf yellowing tolerance( TO:0002664 )
leaf rolling tolerance( TO:0002662 )
|
|
Plant Ontology
|
-
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Mar 12, 2026
|
Update info.