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Basic Information
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CGSNL Gene Symbol
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MIR399A
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Gene Symbol Synonym
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OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a
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CGSNL Gene Name
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MICRORNA399A
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Gene Name Synonym
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microRNA399a, osa-miRNA399a
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Protein Name
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_
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Allele
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Chromosome No.
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1
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Explanation
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miRBASE accession: MI0001053. predicted target(s): Pho2. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011) HM139902-HM139922. LM379297.
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Trait Class
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Tolerance and resistance - Stress tolerance
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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-
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RAP ID
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-
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Links
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INSD Accession List
(Test version)
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Baek D., Hong S., Kim H.J., Moon S., Jung K.H., Yang W.T., Kim D.H.
Int J Mol Sci 2024 25(4)
OsMYB58 Negatively Regulates Plant Growth and Development by Regulating Phosphate Homeostasis.
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Liu J., Liao W., Nie B., Zhang J., Xu W.
Plant J. 2021
OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.
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Hu B., Wang W., Deng K., Li H., Zhang Z., Zhang L., Chu C.
Front Plant Sci 2015 6 188
MicroRNA399 is involved in multiple nutrient starvation responses in rice.
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Secco D., Jabnoune M., Walker H., Shou H., Wu P., Poirier Y., Whelan J.
Plant Cell 2013 25(11) 4285-304
Spatio-Temporal Transcript Profiling of Rice Roots and Shoots in Response to Phosphate Starvation and Recovery.
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Dai X., Wang Y., Yang A., Zhang W.H.
Plant Physiol. 2012 159(1) 169-83
OsMYB2P-1, a R2R3 MYB transcription factor, is involved in regulation of phosphate-starvation responses and root architecture in rice.
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Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
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Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
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Wang,Y., Shen,D., Bo,S., Chen,H., Zheng,J., Zhu,Q.H., Cai,D., Helliwell,C. and Fan,L.
BMC Evol. Biol. 2010 10 119
Sequence variation and selection of small RNAs in domesticated rice
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Bari R, Datt Pant B, Stitt M, Scheible WR.
Plant Physiol. 2006 141(3) 988-99
PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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mRNA cleavage( GO:0006379 )
cellular response to phosphate starvation( GO:0016036 )
cellular response to iron ion starvation( GO:0010106 )
cellular response to potassium ion starvation( GO:0051365 )
gene silencing by miRNA( GO:0035195 )
micro-ribonucleoprotein complex( GO:0035068 )
RNA-induced silencing complex( GO:0016442 )
phosphate ion homeostasis( GO:0055062 )
response to starvation( GO:0042594 )
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Trait Ontology
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phosphorus sensitivity( TO:0000102 )
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Plant Ontology
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-
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Related Strains
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Phenotype images
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Last updated
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Jun 26, 2024
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Update info.