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Basic Information
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CGSNL 遺伝子シンボル
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MIR393
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遺伝子シンボルシノニム
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OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a
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CGSNL 遺伝子名
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MICRORNA393
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遺伝子名シノニム
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MICRORNA393, MICRORNA393A
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タンパク質名
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_
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対立遺伝子
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染色体番号
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1
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解説
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miRBASE accession: MI0001026. LM379278. target genes: OsTIR1 (Os05g0150500), OsAFB2 (Os04g0395600). The overexpression of miR393 (miR393a and miR393b) negatively regulates mRNAs of OsTIR1 and OsAFB2. GO:1901698: response to nitrogen compound. GO:1990110: callus formation.
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形質クラス
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栄養器官 - 稈
栄養器官 - 根
生殖器官 - 出穂期
種子 - 形態学的な特色 - 粒形
耐性、抵抗性 - 病気抵抗性
耐性、抵抗性 - ストレス耐性
QTLの特性 - 収穫と生産性
その他
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発現
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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-
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RAP ID
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Links
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INSD Accession List
(Test version)
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マップ
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位置情報(cM)
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リンケージマップ
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Classical linkage map
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文献
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Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.
Commun Biol 2023 6(1) 457
Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.
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Ma F., Zhang F., Zhu Y., Lan D., Yan P., Wang Y., Hu Z., Zhang X., Hu J., Niu F., Liu M., He S., Cui J., Yuan X., Yan Y., Wu S., Cao L., Bian H., Yang J., Li Z., Luo X.
J Integr Plant Biol 2023 65(7) 1753-1766
Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.
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Arora K., Rai A.K., Devanna B.N., Dubey H., Narula A., Sharma T.R.
Physiol Mol Biol Plants 2021 27(3) 633-647
Deciphering the role of microRNAs during <i>Pi54</i> gene mediated <i>Magnaporthe oryzae</i> resistance response in rice.
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Salvador-Guirao R., Baldrich P., Tomiyama S., Hsing Y.I., Okada K., San Segundo B.
Ann. Bot. 2019 123(1) 79-93
OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.
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Zhang H., Tan X., Li L., He Y., Hong G., Li J., Lin L., Cheng Y., Yan F., Chen J., Sun Z.
Mol. Plant Pathol. 2019 20(8) 1093-1104
Suppression of auxin signalling promotes rice susceptibility to Rice black streaked dwarf virus infection.
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Lu Y., Feng Z., Liu X., Bian L., Xie H., Zhang C., Mysore K.S., Liang J.
BMC Plant Biol. 2018 18(1) 261
MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.
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Li X., Xia K., Liang Z., Chen K., Gao C., Zhang M.
Sci Rep 2016 6 32158
MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds.
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Devi S.J., Madhav M.S., Kumar G.R., Goel A.K., Umakanth B., Jahnavi B., Viraktamath B.C.
Gene 2013 531(1) 15-22
Identification of abiotic stress miRNA transcription factor binding motifs (TFBMs) in rice.
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Xia K., Wang R., Ou X., Fang Z., Tian C., Duan J., Wang Y., Zhang M.
PLoS ONE 2012 7(1) e30039
OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice.
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Bian H., Xie Y., Guo F., Han N., Ma S., Zeng Z., Wang J., Yang Y., Zhu M.
New Phytol. 2012 196(1) 149-61.
Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa).
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Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
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Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
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TextPresso Search
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Search textpresso for MIR393
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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-
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オントロジー
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Gene Ontology
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defense response to fungus( GO:0050832 )
mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
micro-ribonucleoprotein complex( GO:0035068 )
negative regulation of auxin mediated signaling pathway( GO:0010930 )
response to copper ion( GO:0046688 )
response to salt stress( GO:0009651 )
response to UV( GO:0009411 )
response to water deprivation( GO:0009414 )
defense response to bacterium( GO:0042742 )
response to abscisic acid stimulus( GO:0009737 )
gene silencing by miRNA( GO:0035195 )
lateral root formation( GO:0010311 )
defense response to virus( GO:0051607 )
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Trait Ontology
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nitrogen sensitivity( TO:0000011 )
tillering ability( TO:0000329 )
tiller number( TO:0000346 )
auxin sensitivity( TO:0000163 )
abscisic acid sensitivity( TO:0000615 )
drought tolerance( TO:0000276 )
UV light sensitivity( TO:0000160 )
salt tolerance( TO:0006001 )
copper sensitivity( TO:0000021 )
bacterial disease resistance( TO:0000315 )
black streak dwarf virus resistance( TO:0000020 )
blast disease( TO:0000074 )
callus induction( TO:0000428 )
grain length( TO:0000734 )
grain weight( TO:0000590 )
1000-seed weight( TO:0000382 )
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Plant Ontology
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関連系統
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形質画像
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更新日
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2023-09-19 10:48:32.789
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更新情報
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