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Basic Information
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CGSNL Gene Symbol
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MIR393
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Gene Symbol Synonym
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OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a
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CGSNL Gene Name
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MICRORNA393
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Gene Name Synonym
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MICRORNA393, MICRORNA393A
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Protein Name
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_
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Allele
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Chromosome No.
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1
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Explanation
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miRBASE accession: MI0001026. LM379278. target genes: OsTIR1 (Os05g0150500), OsAFB2 (Os04g0395600). The overexpression of miR393 (miR393a and miR393b) negatively regulates mRNAs of OsTIR1 and OsAFB2. GO:1901698: response to nitrogen compound. GO:1990110: callus formation.
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Trait Class
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Other
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Vegetative organ - Root
Tolerance and resistance - Disease resistance
Reproductive organ - Heading date
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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-
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RAP ID
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-
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Links
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.
Commun Biol 2023 6(1) 457
Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.
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Ma F., Zhang F., Zhu Y., Lan D., Yan P., Wang Y., Hu Z., Zhang X., Hu J., Niu F., Liu M., He S., Cui J., Yuan X., Yan Y., Wu S., Cao L., Bian H., Yang J., Li Z., Luo X.
J Integr Plant Biol 2023 65(7) 1753-1766
Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.
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Arora K., Rai A.K., Devanna B.N., Dubey H., Narula A., Sharma T.R.
Physiol Mol Biol Plants 2021 27(3) 633-647
Deciphering the role of microRNAs during <i>Pi54</i> gene mediated <i>Magnaporthe oryzae</i> resistance response in rice.
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Salvador-Guirao R., Baldrich P., Tomiyama S., Hsing Y.I., Okada K., San Segundo B.
Ann. Bot. 2019 123(1) 79-93
OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.
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Zhang H., Tan X., Li L., He Y., Hong G., Li J., Lin L., Cheng Y., Yan F., Chen J., Sun Z.
Mol. Plant Pathol. 2019 20(8) 1093-1104
Suppression of auxin signalling promotes rice susceptibility to Rice black streaked dwarf virus infection.
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Lu Y., Feng Z., Liu X., Bian L., Xie H., Zhang C., Mysore K.S., Liang J.
BMC Plant Biol. 2018 18(1) 261
MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.
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Li X., Xia K., Liang Z., Chen K., Gao C., Zhang M.
Sci Rep 2016 6 32158
MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds.
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Devi S.J., Madhav M.S., Kumar G.R., Goel A.K., Umakanth B., Jahnavi B., Viraktamath B.C.
Gene 2013 531(1) 15-22
Identification of abiotic stress miRNA transcription factor binding motifs (TFBMs) in rice.
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Xia K., Wang R., Ou X., Fang Z., Tian C., Duan J., Wang Y., Zhang M.
PLoS ONE 2012 7(1) e30039
OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice.
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Bian H., Xie Y., Guo F., Han N., Ma S., Zeng Z., Wang J., Yang Y., Zhu M.
New Phytol. 2012 196(1) 149-61.
Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa).
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Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
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Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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defense response to fungus( GO:0050832 )
mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
micro-ribonucleoprotein complex( GO:0035068 )
negative regulation of auxin mediated signaling pathway( GO:0010930 )
response to copper ion( GO:0046688 )
response to salt stress( GO:0009651 )
response to UV( GO:0009411 )
response to water deprivation( GO:0009414 )
defense response to bacterium( GO:0042742 )
response to abscisic acid stimulus( GO:0009737 )
gene silencing by miRNA( GO:0035195 )
lateral root formation( GO:0010311 )
defense response to virus( GO:0051607 )
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Trait Ontology
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nitrogen sensitivity( TO:0000011 )
tillering ability( TO:0000329 )
tiller number( TO:0000346 )
auxin sensitivity( TO:0000163 )
abscisic acid sensitivity( TO:0000615 )
drought tolerance( TO:0000276 )
UV light sensitivity( TO:0000160 )
salt tolerance( TO:0006001 )
copper sensitivity( TO:0000021 )
bacterial disease resistance( TO:0000315 )
black streak dwarf virus resistance( TO:0000020 )
blast disease( TO:0000074 )
callus induction( TO:0000428 )
grain length( TO:0000734 )
grain weight( TO:0000590 )
1000-seed weight( TO:0000382 )
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Plant Ontology
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Related Strains
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Phenotype images
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Last updated
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Sep 19, 2023
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Update info.