|
Basic Information
|
|
CGSNL Gene Symbol
|
TIR1
|
|
Gene Symbol Synonym
|
OsTIR1, OsFbox248, Fbox248, Os_F071, AFB, OsFBL21, FBL21
|
|
CGSNL Gene Name
|
TRANSPORT INHIBITOR RESPONSE 1
|
|
Gene Name Synonym
|
transport inhibitor response 1, Transport Inhibitor Response1, F-box protein 248, Auxin F-box protein, Auxin-signaling F-Box, F-box-type E3 ubiquitin ligase L21
|
|
Protein Name
|
|
|
Allele
|
Ostir1, Ostir1/afb, afb, ostir1-2, tir1
|
|
Chromosome No.
|
5
|
|
Explanation
|
Q0DKP3. a miR393 target gene. miR393a,b target gene. Os_F0717 in Hua et al. 2011. TO:0020102: phosphate content. GO:1990110: callus formation. GO:0038198: auxin receptor activity. GO:2000014: regulation of endosperm development. TO:0000975: grain width. TO:0003015: grain dry weight. TO:0001167: starch gelatinization trait.
|
|
Trait Class
|
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Reproductive organ - Heading date
Vegetative organ - Root
Tolerance and resistance - Disease resistance
Seed - Morphological traits - Grain shape
Reproductive organ - panicle
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Yield and productivity
Character as QTL - Plant growth activity
Seed - Morphological traits - Endosperm
Character as QTL - Grain quality
|
|
Expression
|
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
EU400583
|
|
MSU ID
|
LOC_Os05g05800.1
|
|
RAP ID
|
Os05g0150500
|
|
Links
|
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
|
INSD Accession List
(Test version)
|
-
|
|
Map
|
|
Locate(cM)
|
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Wu D., Cao Y., Wang D., Zong G., Han K., Zhang W., Qi Y., Xu G., Zhang Y.
Plant Physiol. 2024 194(4) 2434-2448
Auxin receptor OsTIR1 mediates auxin signaling during seed filling in rice.
|
|
Ma M., Shen S.Y., Bai C., Wang W.Q., Feng X.H., Ying J.Z., Song X.J.
Cell Rep 2023 42(3) 112187
Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling.
|
|
Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.
Commun Biol 2023 6(1) 457
Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.
|
|
Ma F., Zhang F., Zhu Y., Lan D., Yan P., Wang Y., Hu Z., Zhang X., Hu J., Niu F., Liu M., He S., Cui J., Yuan X., Yan Y., Wu S., Cao L., Bian H., Yang J., Li Z., Luo X.
J Integr Plant Biol 2023 65(7) 1753-1766
Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.
|
|
Zhou S., Huang K., Zhou Y., Hu Y., Xiao Y., Chen T., Yin M., Liu Y., Xu M., Jiang X.
BMC Plant Biol. 2022 22(1) 269
Degradome sequencing reveals an integrative miRNA-mediated gene interaction network regulating rice seed vigor.
|
|
Wang R., You X., Zhang C., Fang H., Wang M., Zhang F., Kang H., Xu X., Liu Z., Wang J., Zhao Q., Wang X., Hao Z., He F., Tao H., Wang D., Wang J., Fang L., Qin M., Zhao T., Zhang P., Xing H., Xiao Y., Liu W., Xie Q., Wang G.L., Ning Y.
Genome Biol. 2022 23(1) 154
An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome.
|
|
Zhao D.D., Park J.R., Jang Y.H., Kim E.G., Du X.X., Farooq M., Yun B.J., Kim K.M.
Plants (Basel) 2022 11(4)
Identification of One Major QTL and a Novel Gene <i>OsIAA17q5</i> Associated with Tiller Number in Rice Using QTL Analysis.
|
|
Guo F., Huang Y., Qi P., Lian G., Hu X., Han N., Wang J., Zhu M., Qian Q., Bian H.
New Phytol. 2020
Functional analysis of auxin receptor OsTIR1/OsAFB family members in rice grain yield, tillering, plant height, root system, germination, and auxinic herbicide resistance.
|
|
Qin Q., Li G., Jin L., Huang Y., Wang Y., Wei C., Xu Z., Yang Z., Wang H., Li Y.
PLoS Pathog. 2020 16(12) e1009118
Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus.
|
|
Zhang H., Tan X., Li L., He Y., Hong G., Li J., Lin L., Cheng Y., Yan F., Chen J., Sun Z.
Mol. Plant Pathol. 2019 20(8) 1093-1104
Suppression of auxin signalling promotes rice susceptibility to Rice black streaked dwarf virus infection.
|
|
Chen H., Ma B., Zhou Y., He S.J., Tang S.Y., Lu X., Xie Q., Chen S.Y., Zhang J.S.
Proc. Natl. Acad. Sci. U.S.A. 2018 115(17) 4513-4518
E3 Ubiquitin ligase SOR1 regulates ethylene response in rice root by modulating stability of Aux/IAA protein.
|
|
Lu Y., Feng Z., Liu X., Bian L., Xie H., Zhang C., Mysore K.S., Liang J.
BMC Plant Biol. 2018 18(1) 261
MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.
|
|
Ma Y., Yang C., He Y., Tian Z., Li J.
J. Exp. Bot. 2017 68(17) 4885-4898
Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.
|
|
Jin L., Qin Q., Wang Y., Pu Y., Liu L., Wen X., Ji S., Wu J., Wei C., Ding B., Li Y.
PLoS Pathog. 2016 12(9) e1005847
Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development.
|
|
Li X., Xia K., Liang Z., Chen K., Gao C., Zhang M.
Sci Rep 2016 6 32158
MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds.
|
|
Jing H., Yang X., Zhang J., Liu X., Zheng H., Dong G., Nian J., Feng J., Xia B., Qian Q., Li J., Zuo J.
Nat Commun 2015 6 7395
Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signalling.
|
|
Wang S., Zhang S., Sun C., Xu Y., Chen Y., Yu C., Qian Q., Jiang D.A., Qi Y.
New Phytol. 2014 201(1) 91-103
Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
|
|
Xia K., Wang R., Ou X., Fang Z., Tian C., Duan J., Wang Y., Zhang M.
PLoS ONE 2012 7(1) e30039
OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice.
|
|
Bian H., Xie Y., Guo F., Han N., Ma S., Zeng Z., Wang J., Yang Y., Zhu M.
New Phytol. 2012 196(1) 149-61.
Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa).
|
|
Hua Z., Zou C., Shin-Han Shiu, Richard D Vierstra
PLoS ONE 2011 6(1) e16219
Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift.
|
|
Xu G., Ma H., Nei M., Kong H.
Proc. Natl. Acad. Sci. U.S.A. 2009 106(3) 835-40
Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification.
|
|
Yang X., Udaya C Kalluri, Jawdy S., Lee E Gunter, Yin T., Timothy J Tschaplinski, David J Weston, Ranjan P., Gerald A Tuskan
Plant Physiol. 2008 148(3) 1189-200
The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants.
|
|
Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP.
Plant Physiol. 2007 143(4) 1467-1483
F-Box Proteins in Rice. Genome-Wide Analysis, Classification, Temporal and Spatial Gene Expression during Panicle and Seed Development, and Regulation by Light and Abiotic Stress.
|
|
DB Reference
|
|
Gramene ID
|
-
|
|
Ontologies
|
|
Gene Ontology
|
regulation of starch biosynthetic process( GO:0010581 )
response to auxin stimulus( GO:0009733 )
regulation of seed development( GO:0080050 )
carbohydrate transmembrane transport( GO:0034219 )
endosperm development( GO:0009960 )
response to herbicide( GO:0009635 )
inositol hexakisphosphate binding( GO:0000822 )
auxin mediated signaling pathway( GO:0009734 )
auxin binding( GO:0010011 )
regulation of ethylene mediated signaling pathway( GO:0010104 )
defense response to virus( GO:0051607 )
|
|
Trait Ontology
|
root length( TO:0000227 )
auxin sensitivity( TO:0000163 )
ethylene sensitivity( TO:0000173 )
black streak dwarf virus resistance( TO:0000020 )
herbicide sensitivity( TO:0000058 )
grain yield( TO:0000396 )
plant height( TO:0000207 )
callus induction( TO:0000428 )
seed size( TO:0000391 )
grain weight( TO:0000590 )
grain length( TO:0000734 )
1000-seed weight( TO:0000382 )
growth and development trait( TO:0000357 )
seed length to width ratio( TO:0000411 )
panicle length( TO:0000040 )
panicle number( TO:0000152 )
spikelet number( TO:0000456 )
grain yield per plant( TO:0000449 )
seed quality( TO:0000162 )
seed development trait( TO:0000653 )
filled grain number( TO:0000447 )
grain width( TO:0000402 )
100-seed weight( TO:0000269 )
sucrose content( TO:0000328 )
fructose content( TO:0006005 )
glucose content( TO:0000300 )
net photosynthetic rate( TO:0001027 )
starch content( TO:0000696 )
amylose content( TO:0000196 )
starch grain synthesis( TO:0002658 )
starch grain shape( TO:0002656 )
endosperm storage protein content( TO:0002653 )
cool paste viscosity( TO:0000379 )
|
|
Plant Ontology
|
scutellum( PO:0020110 )
endosperm development stage( PO:0007633 )
nucellar projection( PO:0008007 )
nucellar epidermis( PO:0008006 )
aleurone layer( PO:0005360 )
endosperm( PO:0009089 )
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Feb 22, 2026
|
Update info.