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Basic Information
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CGSNL 遺伝子シンボル
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SHL2
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遺伝子シンボルシノニム
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shl2, SHL2, sh2, OsRDR6, RDR6
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CGSNL 遺伝子名
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SHOOTLESS 2
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遺伝子名シノニム
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shootless 2, shootless-2, Probable RNA-dependent RNA polymerase SHL2, Protein SHOOTLESS 2, SHOOTLESS2, RNA-dependent RNA polymerase 6, rod-like lemma
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タンパク質名
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PROBABLE RNA-DEPENDENT RNA POLYMERASE SHL2
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対立遺伝子
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shl2-1, shl2-2, shl2-3, shl2-4, shl2-5, shl2-6, shl2-7, shl2-8, shl2-9, shl2-10,shl2-11, shl2-12, shl2-rol, rol, rdr6, rdr6-11, osrdr6-1, osrdr6, Osrdr6-mei, Osrdr6-bi, Osrdr6-edit
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染色体番号
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1
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解説
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胚発生で茎頂分裂組織が分化しない。茎頂分裂組織とともに、鞘葉、エピブラストも欠失する。胚盤、幼根は正常。この変異体では、ホメオボックス遺伝子OSH1の発現領域が極端に狭くなる。茎頂分裂組織の分化に不可欠な遺伝子。5つの対立遺伝子の表現型はshl2とほぼ同じ。 EC=2.7.7.48 RNA-dependent RNA polymerase. AB353923. Q8LHH9. PO:0009009; embryo ; PO:0020144; apical meristem. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. a predicted lethal-phenotype gene in Lloyd et al. 2015. the NCBI Gene Expression Omnibus database under accession number GSE151871.
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形質クラス
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種子 - 形態学的な特色 - 胚
耐性、抵抗性 - 病気抵抗性
栄養器官 - 茎頂分裂組織
生殖器官 - 小穂、花、頴、芒
耐性、抵抗性 - ストレス耐性
生殖器官 - 受粉、受精、稔性 - 減数分裂
生殖器官 - 受粉、受精、稔性 - 不稔性
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発現
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Sequence/Locus
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cDNA Accession No.
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AK108380
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MSU ID
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LOC_Os01g34350.1
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RAP ID
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Os01g0527600
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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マップ
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位置情報(cM)
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リンケージマップ
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Classical linkage map
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文献
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Gu X., Si F., Feng Z., Li S., Liang D., Yang P., Yang C., Yan B., Tang J., Yang Y., Li T., Li L., Zhou J., Li J., Feng L., Liu J.Y., Yang Y., Deng Y., Wu X.N., Zhao Z., Wan J., Cao X., Song X., He Z., Liu J.
Nat Commun 2023 14(1) 4441
The OsSGS3-tasiRNA-OsARF3 module orchestrates abiotic-biotic stress response trade-off in rice.
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Wang J., Liu Y., Hu S., Xu J., Nian J., Cao X., Chen M., Cen J., Liu X., Zhang Z., Liu D., Zhu L., Hu J., Ren D., Gao Z., Shen L., Dong G., Zhang Q., Li Q., Yu S., Qian Q., Zhang G.
Int J Mol Sci 2022 23(15)
<i>LEAF TIP RUMPLED 1</i> Regulates Leaf Morphology and salt tolerance in Rice.
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Liu C., Shen Y., Qin B., Wen H., Cheng J., Mao F., Shi W., Tang D., Du G., Li Y., Wu Y., Cheng Z.
Plant Cell 2020 32(10) 3273-3289
<i>Oryza sativa</i> RNA-Dependent RNA polymerase 6 Contributes to Double-Strand Break Formation in Meiosis.
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He Y., Shi Y., Zhang X., Xu X., Wang H., Li L., Zhang Z., Shang H., Wang Z., Jian-Li Wu
Plant Physiol. 2020 184(1) 283-299
The OsABCI7 Transporter Interacts with OsHCF222 to Stabilize the Thylakoid Membrane in Rice.
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Hong W., Qian D., Sun R., Jiang L., Wang Y., Wei C., Zhang Z., Li Y.
Sci Rep 2015 5 11324
OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus.
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Lloyd J.P., Seddon A.E., Moghe G.D., Simenc M.C., Shiu S.H.
Plant Cell 2015
Characteristics of Plant Essential Genes Allow for within- and between-Species Prediction of Lethal Mutant Phenotypes.
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Komiya R., Ohyanagi H., Niihama M., Watanabe T., Nakano M., Kurata N., Nonomura K.I.
Plant J. 2014 78(3) 385-97
Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs.
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Toriba T.a b, Hirano H.Y.a
Plant Journal 2014 77 616-626
The DROOPING LEAF and OsETTIN2 genes promote awn development in rice
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Song X., Wang D., Ma L., Chen Z., Li P., Cui X., Liu C., Cao S., Chu C., Tao Y., Cao X.
Plant J. 2012 71(3) 378-89
Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
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Jiang L., Qian D., Zheng H., Meng L.Y., Chen J., Le W.J., Zhou T., Zhou Y.J., Wei C.H., Li Y.
Virus Res. 2012 163(2) 512-9
RNA-dependent RNA polymerase 6 of rice (Oryza sativa) plays role in host defense against negative-strand RNA virus, Rice stripe virus.
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Toriba T., Suzaki T., Yamaguchi T., Ohmori Y., Tsukaya H., Hiro-Yuki Hirano
Plant Cell 2010 22(5) 1452-62
Distinct regulation of adaxial-abaxial polarity in anther patterning in rice.
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Zong J., Yao X., Yin J., Zhang D., Ma H.
Gene 2009 447(1) 29-39
Evolution of the RNA-dependent RNA polymerase (RdRP) genes: duplications and possible losses before and after the divergence of major eukaryotic groups.
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Yang JH, Seo HH, Han SJ, Yoon EK, Yang MS, Lee WS.
Nucleic Acids Res. 2007 36(4) 1220-6.
Phytohormone abscisic acid control RNA-dependent RNA polymerase 6 gene expression and post-transcriptional gene silencing in rice cells.
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Nagasaki H, Itoh J, Hayashi K, Hibara K, Satoh-Nagasawa N, Nosaka M, Mukouhata M, Ashikari M, Kitano H, Matsuoka M, Nagato Y, Sato Y.
Proc. Natl. Acad. Sci. U.S.A. 2007 104(37) 14867-71
The small interfering RNA production pathway is required for shoot meristem initiation in rice.
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Satoh, N., Itoh, J.-I. and Nagato, Y.
Genetics 2003 164 335-346
The SHOOTLESS2 and SHOOTLESS1 genes are involved in both initiation and maintenance of the shoot apical meristem through regulating the number of indeterminate cells.
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Satoh, N. and Y. Nagato
RGN 2000 17 26-28
SHOOTLESS 2 gene is required for both initiation and maintenance of shoot apical meristem in rice.
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Ito, M., Y. Sato, N. Nagasawa, H. Kitano, Y. Nagato and M. Matsuoka
RGN 1999 16 39-41.
Mapping of two SHOOTLESS genes, SHL1 and SHL2, by RFLP analysis.
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Satoh, N., S-K. Hong, A. Nishimura, M. Matsuoka, H. Kitano, Y. Nagato.
Development 1999 126 3629-3636.
Initiation of shoot apical meristem in rice: characterization of four SHOOTLESS genes.
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Satoh, N., S.K. Hong, M. Matsuoka, H. Kitano and Y. Nagato
RGN 1997 14 145-147.
Characterization of shootless mutants in rice.
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Satoh, N., S.K. Hong, H. Kitano, M. Matsuoka and Y. Nagato
Breeding Science 1996 46(Suppl. 2) 270
Characterization of rice shootless mutants using several molecular markers.
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Hong, S.K., T, Aoki, H. Kitano, H. Satoh and Y. Nagato
Dev Genet. 1995 16 298-310.
Phenotypic diversity of 188 rice embryo mutants.
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Kitano, H., Y. Tamura, H. Satoh and Y. Nagato
Plant J. 1993 3(4) 607-610.
Hierarchical regulation of organ differentiation during embryogenesis in rice.
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TextPresso Search
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Search textpresso for SHL2
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0060880
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オントロジー
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Gene Ontology
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defense response to bacterium( GO:0042742 )
response to heat( GO:0009408 )
meiotic DNA double-strand break formation( GO:0042138 )
DNA methylation( GO:0006306 )
organ morphogenesis( GO:0009887 )
RNA binding( GO:0003723 )
RNA-directed RNA polymerase activity( GO:0003968 )
mitochondrion( GO:0005739 )
tissue development( GO:0009888 )
RNA interference( GO:0016246 )
maintenance of shoot apical meristem identity( GO:0010492 )
defense response to virus( GO:0051607 )
response to stress( GO:0006950 )
response to temperature stimulus( GO:0009266 )
response to abscisic acid stimulus( GO:0009737 )
production of siRNA involved in RNA interference( GO:0030422 )
gene silencing by RNA( GO:0031047 )
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Trait Ontology
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embryo related trait( TO:0000064 )
floret anatomy and morphology trait( TO:0000274 )
awn anatomy and morphology trait( TO:0002718 )
viral disease resistance( TO:0000148 )
abscisic acid sensitivity( TO:0000615 )
stress trait( TO:0000164 )
temperature response trait( TO:0000432 )
sterility related trait( TO:0000485 )
heat tolerance( TO:0000259 )
hydrogen peroxide content( TO:0000605 )
bacterial blight disease resistance( TO:0000175 )
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Plant Ontology
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plant embryo( PO:0009009 )
apical meristem( PO:0020144 )
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関連系統
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突然変異系統 (遺伝研)
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1
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Lethal Embryo Mutation strain
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12
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形質画像
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クリックすると新しいウィンドウに等倍画像が表示されます。
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提供元:
長戸康郎
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更新日
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2023-11-10 10:25:43.124
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更新情報
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