Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SIG5
Gene Symbol Synonym OsSIG5, OsSig5, Os Sig5
CGSNL Gene Name SIGMA FACTOR 5
Gene Name Synonym Sigma factor SIG5, SIG5 homolog
Protein Name SIGMA FACTOR 5
Allele
Chromosome No. 5
Explanation AB096011, AB096071.
Trait Class Other
Expression
Sequence/Locus
cDNA Accession No. AK105697
MSU ID LOC_Os05g50930.1
LOC_Os05g50930.2
RAP ID Os05g0586600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Li R.Q., Jiang M., Liu Y.H., Zheng Y.C., Huang J.Z., Wu J.M., Shu Q.Y.
Front Plant Sci 2017  8  901
The xantha Marker Trait Is Associated with Altered Tetrapyrrole Biosynthesis and Deregulated Transcription of PhANGs in Rice.
Nakamura H,Muramatsu M,Hakata M,Ueno O,Nagamura Y,Hirochika H,Takano M,Ichikawa H
Plant Cell Physiol. 2009  50(11)  1933-49
Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells.
Kubota,Y., Miyao,A., Hirochika,H., Tozawa,Y., Yasuda,H., Tsunoyama,Y., Niwa,Y., Imamura,S., Shirai,M. and Asayama,M.
Plant Cell Physiol. 2007  48(1)  186-192
Two Novel Nuclear Genes, OsSIG5 and OsSIG6, Encoding Potential Plastid Sigma Factors of RNA Polymerase in Rice: Tissue-Specific and Light-Responsive Gene Expression.
Tsunoyama,Y., Ishizaki,Y., Morikawa,K., Kobori,M., Nakahira,Y., Takeba,G., Toyoshima,Y. and Shiina,T.
Proc. Natl. Acad. Sci. U.S.A. 2004  101(9)  3304-3309
Blue light-induced transcription of plastid-encoded psbD gene is mediated by a nuclear-encoded transcription initiation factor, AtSig5.
DB Reference
Gramene ID -
Ontologies
Gene Ontology DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
transcription initiation( GO:0006352 )
plastid( GO:0009536 )
DNA-directed RNA polymerase activity( GO:0003899 )
sigma factor activity( GO:0016987 )
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Dec 30, 2017

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