Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol YGL13
Gene Symbol Synonym OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA
CGSNL Gene Name YELLOW-GREEN LEAF 13
Gene Name Synonym Sigma factor SIG1, plastid sigma factor SIG1, sigma A, sigma factor A, yellow-green leaf 13, yellow green leaf 13
Protein Name SIGMA FACTOR A
Allele ygl13
Chromosome No. 8
Explanation AB005290.
Trait Class Vegetative organ - Leaf
Coloration - Others
Coloration - Chlorophyll
Other
Expression
Sequence/Locus
cDNA Accession No. AK065997
MSU ID LOC_Os08g06630.1
LOC_Os08g06630.3
RAP ID Os08g0163400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
R A O Yuchun, J I A O Ran, W A N G Sheng, W U Xianmei, Y E Hanfei, P A N Chenyang, L I Sanfeng, Dedong X., Z H O U Weiyong, D A I Gaoxing, H U Juan, R E N Deyong, W A N G Yuexing
Rice (N Y) 2021  14(1)  34
SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice.
Kusano M., Fukushima A., Tabuchi-Kobayashi M., Funayama K., Kojima S., Maruyama K., Yamamoto Y.Y., Nishizawa T., Kobayashi M., Wakazaki M., Sato M., Toyooka K., Osanai-Kondo K., Utsumi Y., Seki M., Fukai C., Saito K., Yamaya T.
Plant Physiol. 2020  182(4)  1894-1909
Cytosolic GLUTAMINE SYNTHETASE1;1 Modulates Metabolism and Chloroplast Development in Roots.
WANG Ya-qin, SHI Jun-qiong, ZHANG Ting, LI Yan, ZHANG Tian-quan, ZHANG Xiao-long, SANG Xian-chun, LING Ying-Hua, HE Guang-Hua
Scientia Agricultura Sinica 2015  48(21)  4197-4208
Characterization and Candidate Gene Analysis of yellow-green leaf Mutant YGL13 in Rice (Oryza sativa)
Nakamura H,Muramatsu M,Hakata M,Ueno O,Nagamura Y,Hirochika H,Takano M,Ichikawa H
Plant Cell Physiol. 2009  50(11)  1933-49
Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells.
Tozawa Y,Teraishi M,Sasaki T,Sonoike K,Nishiyama Y,Itaya M,Miyao A,Hirochika H
Plant J. 2007  52  124-32
The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts.
Kasai K., Makiko Kawagishi-Kobayashi, Teraishi M., Ito Y., Ochi K., Wakasa K., Tozawa Y.
Biosci. Biotechnol. Biochem. 2004  68(4)  973-7
Differential expression of three plastidial sigma factors, OsSIG1, OsSIG2A, and OsSIG2B, during leaf development in rice.
Tsunoyama,Y., Ishizaki,Y., Morikawa,K., Kobori,M., Nakahira,Y., Takeba,G., Toyoshima,Y. and Shiina,T.
Proc. Natl. Acad. Sci. U.S.A. 2004  101(9)  3304-3309
Blue light-induced transcription of plastid-encoded psbD gene is mediated by a nuclear-encoded transcription initiation factor, AtSig5.
Tozawa,Y., Tanaka,K., Takahashi,H. and Wakasa,K.
Nucleic Acids Res. 1998  26(2)  415-419
Nuclear encoding of a plastid sigma factor in rice and its tissue- and light-dependent expression.
DB Reference
Gramene ID -
Ontologies
Gene Ontology sigma factor activity( GO:0016987 )
DNA binding( GO:0003677 )
chloroplast organization( GO:0009658 )
response to light stimulus( GO:0009416 )
transcription initiation( GO:0006352 )
transcription factor activity( GO:0003700 )
Trait Ontology chlorophyll-a content( TO:0000293 )
chlorophyll-b content( TO:0000295 )
carotenoid content( TO:0000496 )
chloroplast development trait( TO:0002715 )
filled grain number( TO:0000447 )
plant height( TO:0000207 )
spikelet fertility( TO:0000180 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Jul 22, 2021

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