Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol NCED1
Gene Symbol Synonym OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3
Gene Name Synonym 9-cis-epoxycarotenoid dioxygenase 1, 9-Cis-Epoxycarotenoid Dioxygenase 3
Chromosome No. 3
Explanation AC120531. AY838899. OsNCED3 in Welsch et al. 2008, Liu et al. 2012, Xu et al. 2013, Teng et al. 2014 , Chen et al. 2014, Liang et al. 2014, Shi et al. 2015, Du et al. 2015, Li et al. 2015, Zhao et al. 2016, Hong et al. 2016, Mao et al. 2017, He et al. 2018, Liu et al. 2018, Liu et al. 2019, Chen et al. 2019, Gong et al. 2019, Kim et al. 2019, Cao et al. 2020, Suriyasak et al. 2020.
Trait Class Biochemical character
Seed - Physiological traits - Dormancy
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
cDNA Accession No. AY838899
MSU ID LOC_Os03g44380.1
RAP ID Os03g0645900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Suriyasak C., Oyama Y., Ishida T., Mashiguchi K., Yamaguchi S., Hamaoka N., Iwaya-Inoue M., Ishibashi Y.
Sci Rep 2020  10(1)  17378
Mechanism of delayed seed germination caused by high temperature during grain filling in rice (Oryza sativa L.).
Cao X., Wu L., Wu M., Zhu C., Jin Q., Zhang J.
BMC Plant Biol. 2020  20(1)  198
Abscisic acid mediated proline biosynthesis and antioxidant ability in roots of two different rice genotypes under hypoxic stress.
Kim T., Kang K., Kim S.H., An G., Paek N.C.
Int J Mol Sci 2019  20(18) 
OsWRKY5 Promotes Rice leaf senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.
Gong P., Luo Y., Huang F., Chen Y., Zhao C., Wu X., Li K., Yang X., Cheng F., Xiang X., Wu C., Pan G.
Plant Mol. Biol. 2019  100(1-2)  133-149
Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.
Chen B.X., Peng Y.X., Gao J.D., Zhang Q., Liu Q.J., Fu H., Liu J.
Front Plant Sci 2019  10  828
Coumarin-Induced Delay of Rice Seed Germination Is Mediated by Suppression of Abscisic Acid Catabolism and Reactive Oxygen Species Production.
Liu C., Schläppi MR., Mao B., Wang W., Wang A., Chu C.
Plant Biotechnol. J. 2019   
The bZIP73 transcription factor controls rice cold tolerance at the reproductive stage.
Jiang D., Zhou L., Chen W., Ye N., Xia J., Zhuang C.
Rice (N Y) 2019  12(1)  76
Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.
Liu C., Ou S., Mao B., Tang J., Wang W., Wang H., Cao S., Schläppi MR., Zhao B., Xiao G., Wang X., Chu C.
Nat Commun 2018  9(1)  3302
Early selection of bZIP73 facilitated adaptation of japonica rice to cold climates.
Huang L., Zhang M., Jia J., Zhao X., Huang X., Ji E., Ni L., Jiang M.
Plant Cell Physiol. 2018  59(5)  916-929
An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays a Positive Role in ABA-Induced Antioxidant Defense in Oryza sativa L.
Yao L., Cheng X., Gu Z., Huang W., Li S., Wang L., Wang Y.F., Xu P., Ma H., Ge X.
Plant Cell 2018  30(6)  1258-1276
The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.
He Y., Li L., Zhang Z., Wu J.L.
Int J Mol Sci 2018  19(1) 
Identification and Comparative Analysis of Premature Senescence Leaf Mutants in Rice (Oryza sativa L.).
Bollinedi H., S GK., Prabhu K.V., Singh N.K., Mishra S., Khurana J.P., Singh A.K.
PLoS ONE 2017  12(1)  e0169600
Molecular and Functional Characterization of GR2-R1 Event Based Backcross Derived Lines of Golden Rice in the Genetic Background of a Mega Rice Variety Swarna.
Mao C., Lu S., Lv B., Zhang B., Shen J., He J., Luo L., Xi D., Chen X., Ming F.
Plant Physiol. 2017  174(3)  1747-1763
A Rice NAC Transcription Factor Promotes leaf senescence via ABA Biosynthesis.
Zhao J., Li M., Gu D., Liu X., Zhang J., Wu K., Zhang X., Teixeira da Silva JA., Duan J.
Biochem. Biophys. Res. Commun. 2016  470(2)  439-44
Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.
Hong Y., Zhang H., Huang L., Li D., Song F.
Front Plant Sci 2016  7  4
Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and salt tolerance in Rice.
Li S.B., Xu S.R., Zhang R.N., Liu Y., Zhou R.C.
J. Microbiol. Biotechnol. 2015   
The antibiosis action and rice induced resistance, mediated by a lipopeptide from Bacillus amyloliquefaciens B014, in controlling rice disease caused by Xanthomonas oryzae pv. Oryzae.
Shi L., Guo M., Ye N., Liu Y., Liu R., Xia Y., Cui S., Zhang J.
Plant Cell Physiol. 2015  56(5)  951-64
Reduced ABA Accumulation in the root system is Caused by ABA Exudation in Upland Rice (Oryza sativa L. var. Gaoshan1) and this Enhanced Drought Adaptation.
Chen M., Zhao Y., Zhuo C., Lu S., Guo Z.
Plant Biotechnol. J. 2014   
Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
Liang C., Wang Y., Zhu Y., Tang J., Hu B., Liu L., Ou S., Wu H., Sun X., Chu J., Chu C.
Proc. Natl. Acad. Sci. U.S.A. 2014  111(27)  10013-8
OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice.
Du H., Chang Y., Huang F., Xiong L.
J Integr Plant Biol 2014   
gid1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.
Teng K., Li J., Liu L., Han Y., Du Y., Zhang J., Sun H., Zhao Q.
Acta Physiologiae Plantarum 2014  36  2219-2227
Exogenous ABA induces drought tolerance in upland rice: The role of chloroplast and ABA biosynthesis-related gene expression on photosystem II during PEG stress
Zeng D.E.a b, Hou P.a, Xiao F.c, Liu Y.a d
Journal of Plant Biology 2014  57  357-365
Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)
Xu J., Audenaert K., Hofte M., De Vleesschauwer D.
PLoS ONE 2013  8(6)  e67413
Abscisic Acid Promotes Susceptibility to the Rice Leaf Blight Pathogen Xanthomonas oryzae pv oryzae by Suppressing Salicylic Acid-Mediated Defenses.
Fukumoto T., Kano A., Ohtani K., Inoue M., Yoshihara A., Izumori K., Tajima S., Shigematsu Y., Tanaka K., Ohkouchi T., Ishida Y., Nishizawa Y., Tada Y., Ichimura K., Gomi K., Yoo S.D., Sheen J., Akimitsu K.
Planta 2013  237(5)  1379-91
Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L.
Liu H., Li X., Xiao J., Wang S.
Plant Methods 2012  8(1)  2
A convenient method for simultaneous quantification of multiple phytohormones and metabolites: application in study of rice-bacterium interaction.
Saeng-ngam S., Takpirom W., Buaboocha T., Chadchawan S.
Journal of Plant Biology 2012  55  198-208
The role of the OsCam1-1 salt stress sensor in ABA accumulation and salt tolerance in rice
Song S., Dai X., Zhang W.H.
J. Exp. Bot. 2012  63(15)  5559-68
A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice.
Liu D., Chen X., Liu J., Ye J., Guo Z.
J. Exp. Bot. 2012  63  3899-3912
The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance.
Ji X. , Dong B. , Shiran B. , Talbot M.J. , Edlington J.E. , Hughes T. , White R.G. , Gubler F. , Dolferus R.
Plant Physiol. 2011  156(2)  647-62
Control of abscisic Acid catabolism and abscisic Acid homeostasis is important for reproductive stage stress tolerance in cereals.
Mahmoud W Yaish, Ashraf El-Kereamy, Zhu T., Perrin H Beatty, Allen G Good, Yong-Mei Bi, Steven J Rothstein
PLoS Genet. 2010  6(9)  e1001098
The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice.
Zhu G,Ye N,Zhang J
Plant Cell Physiol. 2009  50  644-51
Glucose-induced delay of seed germination in rice is mediated by the suppression of ABA catabolism rather than an enhancement of ABA biosynthesis.
Welsch,R., Wust,F., Bar,C., Al-Babili,S. and Beyer,P.
Plant Physiol. 2008  147(1)  367-380
A third phytoene synthase is devoted to abiotic stress-induced abscisic acid formation in rice and defines functional diversification of phytoene synthase genes
Oliver SN,Dennis ES,Dolferus R
Plant Cell Physiol. 2007  48  1319-30
ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice.
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DB Reference
Gramene ID -
Gene Ontology seed germination( GO:0009845 )
response to cold( GO:0009409 )
response to hypoxia( GO:0001666 )
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen( GO:0016702 )
9-cis-epoxycarotenoid dioxygenase activity( GO:0045549 )
abscisic acid biosynthetic process( GO:0009688 )
defense response to bacterium( GO:0042742 )
response to abscisic acid stimulus( GO:0009737 )
response to osmotic stress( GO:0006970 )
response to water deprivation( GO:0009414 )
response to molecule of bacterial origin( GO:0002237 )
Trait Ontology abscisic acid content( TO:0002667 )
bacterial blight disease resistance( TO:0000175 )
abscisic acid sensitivity( TO:0000615 )
osmotic response sensitivity( TO:0000095 )
drought tolerance( TO:0000276 )
oxygen sensitivity( TO:0000015 )
cold tolerance( TO:0000303 )
Plant Ontology 0 seed germination stage( PO:0007057 )
Related Strains
Phenotype images
Last updated
Jan 13, 2021