Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol NCED1
Gene Symbol Synonym OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9
Gene Name Synonym 9-cis-epoxycarotenoid dioxygenase 1, 9-Cis-Epoxycarotenoid Dioxygenase 3
Chromosome No. 3
Explanation AC120531. AY838899. OsNCED3 in Welsch et al. 2008, Liu et al. 2012, Xu et al. 2013, Teng et al. 2014 , Chen et al. 2014, Liang et al. 2014, Shi et al. 2015, Du et al. 2015, Li et al. 2015, Zhao et al. 2016, Hong et al. 2016, Mao et al. 2017, He et al. 2018, Liu et al. 2018, Liu et al. 2019, Chen et al. 2019, Gong et al. 2019, Kim et al. 2019, Cao et al. 2020, Suriyasak et al. 2020, Dong et al. 2021, Verma et al. 2019, Santosh et al. 2021, Li et al. 2021, Yu et al. 2021, Da Costa et al. 2021, Yang et al. 2022, He et al. 2022, Yi et al. 2022, Zhou et al. 2022, Wen et al. 2022, Shi et al. 2020, Li et al. 2023, Um et al. 2022, Yan et al. 2023, Long et al. 2023, Xie et al. 2024. OsNCED9 in Taniguchi et al. 2023.
Trait Class Biochemical character
Seed - Physiological traits - Dormancy
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
cDNA Accession No. AY838899
MSU ID LOC_Os03g44380.1
RAP ID Os03g0645900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Xie Z., Jin L., Sun Y., Zhan C., Tang S., Qin T., Liu N., Huang J.
Plant Commun 2024  5(3)  100782
OsNAC120 balances plant growth and drought tolerance by integrating GA and ABA signaling in rice.
Long Q., Qiu S., Man J., Ren D., Xu N., Luo R.
Rice (N Y) 2023  16(1)  35
OsAAI1 Increases Rice Yield and drought tolerance Dependent on ABA-Mediated Regulatory and ROS Scavenging Pathway.
Yan J., Ninkuu V., Fu Z., Yang T., Ren J., Li G., Yang X., Zeng H.
Front Plant Sci 2023  14  1163939
OsOLP1 contributes to drought tolerance in rice by regulating ABA biosynthesis and lignin accumulation.
Li Q., Zhai W., Wei J., Jia Y.
Front Genet 2023  14  1111318
Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.
Taniguchi S., Takeda A., Kiryu M., Gomi K.
Int J Mol Sci 2023  24(2) 
Jasmonic Acid-Induced β-Cyclocitral Confers Resistance to Bacterial Blight and Negatively Affects Abscisic Acid Biosynthesis in Rice.
He Y., Chen S., Liu K., Chen Y., Cheng Y., Zeng P., Zhu P., Xie T., Chen S., Zhang H., Cheng J.
Plant Biotechnol. J. 2022  20(7)  1346-1362
OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.
Yang B., Chen M., Zhan C., Liu K., Cheng Y., Xie T., Zhu P., He Y., Zeng P., Tang H., Tsugama D., Chen S., Zhang H., Cheng J.
J. Exp. Bot. 2022   
Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via GWAS.
Yi Y., Peng Y., Song T., Lu S., Teng Z., Zheng Q., Zhao F., Meng S., Liu B., Peng Y., Chen G., Zhang J., Ye N.
Plants (Basel) 2022  11(6) 
NLP2-NR Module Associated NO Is Involved in Regulating Seed Germination in Rice under Salt Stress.
Um T.Y., Hong S.Y., Han J.S., Jung K.H., Moon S., Choi B.S., Basnet P., Chung Y.S., Lee S.W., Yang W.T., Kim D.H.
Front Plant Sci 2022  13  1027688
<i>Gibberellic acid sensitive dwarf</i> encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.
Wen D., Bao L., Huang X., Qian X., Chen E., Shen B.
Int J Mol Sci 2022  23(18) 
<i>OsABT</i> Is Involved in Abscisic Acid Signaling Pathway and salt tolerance of Roots at the Rice Seedling Stage.
Zhou Z., Fan J., Zhang J., Yang Y., Zhang Y., Zan X., Li X., Wan J., Gao X., Chen R., Huang Z., Xu Z., Li L.
Plants (Basel) 2022  11(13) 
<i>OsMLP423</i> Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.
Guo F., Zhang P., Wu Y., Lian G., Yang Z., Liu W., Buerte B., Zhou C., Zhang W., Li D., Han N., Tong Z., Zhu M., Xu L., Chen M., Bian H.
Front Plant Sci 2022  13  887980
Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.
Dong J., Zhou L., Feng A., Zhang S., Fu H., Chen L., Zhao J., Yang T., Yang W., Ma Y., Wang J., Zhu X., Liu Q., Liu B.
Rice (N Y) 2021  14(1)  51
The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice.
Li X., Yu B., Wu Q., Min Q., Zeng R., Xie Z., Huang J.
PLoS Genet. 2021  17(8)  e1009699
OsMADS23 phosphorylated by SAPK9 confers drought and salt tolerance by regulating ABA biosynthesis in rice.
Da Costa MVJ., Ramegowda V., Sreeman S., Nataraja K.N.
Int J Mol Sci 2021  22(21) 
Targeted Phytohormone Profiling Identifies Potential Regulators of spikelet sterility in Rice under Combined Drought and Heat Stress.
Yu J., Mao C., Zhong Q., Yao X., Li P., Liu C., Ming F.
Front Plant Sci 2021  12  699303
OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling.
Santosh Kumar VV., Yadav S.K., Verma R.K., Shrivastava S., Ghimire O., Pushkar S., Rao M.V., Senthil Kumar T., Chinnusamy V.
J. Exp. Bot. 2021  72(4)  1411-1431
The abscisic acid receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms.
Suriyasak C., Oyama Y., Ishida T., Mashiguchi K., Yamaguchi S., Hamaoka N., Iwaya-Inoue M., Ishibashi Y.
Sci Rep 2020  10(1)  17378
Mechanism of delayed seed germination caused by high temperature during grain filling in rice (Oryza sativa L.).
Shi Y., Chang Y.L., Wu H.T., Shalmani A., Liu W.T., Li W.Q., Xu J.W., Chen K.M.
Plant Cell Rep. 2020  39(12)  1767-1784
OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice.
Cao X., Wu L., Wu M., Zhu C., Jin Q., Zhang J.
BMC Plant Biol. 2020  20(1)  198
Abscisic acid mediated proline biosynthesis and antioxidant ability in roots of two different rice genotypes under hypoxic stress.
Liu C., Schläppi MR., Mao B., Wang W., Wang A., Chu C.
Plant Biotechnol. J. 2019   
The bZIP73 transcription factor controls rice cold tolerance at the reproductive stage.
Chen B.X., Peng Y.X., Gao J.D., Zhang Q., Liu Q.J., Fu H., Liu J.
Front Plant Sci 2019  10  828
Coumarin-Induced Delay of Rice Seed Germination Is Mediated by Suppression of Abscisic Acid Catabolism and Reactive Oxygen Species Production.
Gong P., Luo Y., Huang F., Chen Y., Zhao C., Wu X., Li K., Yang X., Cheng F., Xiang X., Wu C., Pan G.
Plant Mol. Biol. 2019  100(1-2)  133-149
Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.
Kim T., Kang K., Kim S.H., An G., Paek N.C.
Int J Mol Sci 2019  20(18) 
OsWRKY5 Promotes Rice leaf senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.
Jiang D., Zhou L., Chen W., Ye N., Xia J., Zhuang C.
Rice (N Y) 2019  12(1)  76
Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.
Verma R.K., Santosh Kumar VV., Yadav S.K., Pushkar S., Rao M.V., Chinnusamy V.
Front Plant Sci 2019  10  1488
Overexpression of ABA Receptor <i>PYL10</i> Gene Confers Drought and Cold Tolerance to Indica Rice.
Liu C., Ou S., Mao B., Tang J., Wang W., Wang H., Cao S., Schläppi MR., Zhao B., Xiao G., Wang X., Chu C.
Nat Commun 2018  9(1)  3302
Early selection of bZIP73 facilitated adaptation of japonica rice to cold climates.
Huang L., Zhang M., Jia J., Zhao X., Huang X., Ji E., Ni L., Jiang M.
Plant Cell Physiol. 2018  59(5)  916-929
An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays a Positive Role in ABA-Induced Antioxidant Defense in Oryza sativa L.
Yao L., Cheng X., Gu Z., Huang W., Li S., Wang L., Wang Y.F., Xu P., Ma H., Ge X.
Plant Cell 2018  30(6)  1258-1276
The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.
He Y., Li L., Zhang Z., Wu J.L.
Int J Mol Sci 2018  19(1) 
Identification and Comparative Analysis of Premature Senescence Leaf Mutants in Rice (Oryza sativa L.).
Bollinedi H., S GK., Prabhu K.V., Singh N.K., Mishra S., Khurana J.P., Singh A.K.
PLoS ONE 2017  12(1)  e0169600
Molecular and Functional Characterization of GR2-R1 Event Based Backcross Derived Lines of Golden Rice in the Genetic Background of a Mega Rice Variety Swarna.
Mao C., Lu S., Lv B., Zhang B., Shen J., He J., Luo L., Xi D., Chen X., Ming F.
Plant Physiol. 2017  174(3)  1747-1763
A Rice NAC Transcription Factor Promotes leaf senescence via ABA Biosynthesis.
Zhao J., Li M., Gu D., Liu X., Zhang J., Wu K., Zhang X., Teixeira da Silva JA., Duan J.
Biochem. Biophys. Res. Commun. 2016  470(2)  439-44
Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.
Hong Y., Zhang H., Huang L., Li D., Song F.
Front Plant Sci 2016  7  4
Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and salt tolerance in Rice.
Shi L., Guo M., Ye N., Liu Y., Liu R., Xia Y., Cui S., Zhang J.
Plant Cell Physiol. 2015  56(5)  951-64
Reduced ABA Accumulation in the root system is Caused by ABA Exudation in Upland Rice (Oryza sativa L. var. Gaoshan1) and this Enhanced Drought Adaptation.
Li S.B., Xu S.R., Zhang R.N., Liu Y., Zhou R.C.
J. Microbiol. Biotechnol. 2015   
The antibiosis action and rice induced resistance, mediated by a lipopeptide from Bacillus amyloliquefaciens B014, in controlling rice disease caused by Xanthomonas oryzae pv. Oryzae.
Teng K., Li J., Liu L., Han Y., Du Y., Zhang J., Sun H., Zhao Q.
Acta Physiologiae Plantarum 2014  36  2219-2227
Exogenous ABA induces drought tolerance in upland rice: The role of chloroplast and ABA biosynthesis-related gene expression on photosystem II during PEG stress
Du H., Chang Y., Huang F., Xiong L.
J Integr Plant Biol 2014   
gid1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.
Zeng D.E.a b, Hou P.a, Xiao F.c, Liu Y.a d
Journal of Plant Biology 2014  57  357-365
Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)
Chen M., Zhao Y., Zhuo C., Lu S., Guo Z.
Plant Biotechnol. J. 2014   
Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
Liang C., Wang Y., Zhu Y., Tang J., Hu B., Liu L., Ou S., Wu H., Sun X., Chu J., Chu C.
Proc. Natl. Acad. Sci. U.S.A. 2014  111(27)  10013-8
OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice.
Xu J., Audenaert K., Hofte M., De Vleesschauwer D.
PLoS ONE 2013  8(6)  e67413
Abscisic Acid Promotes Susceptibility to the Rice Leaf Blight Pathogen Xanthomonas oryzae pv oryzae by Suppressing Salicylic Acid-Mediated Defenses.
Fukumoto T., Kano A., Ohtani K., Inoue M., Yoshihara A., Izumori K., Tajima S., Shigematsu Y., Tanaka K., Ohkouchi T., Ishida Y., Nishizawa Y., Tada Y., Ichimura K., Gomi K., Yoo S.D., Sheen J., Akimitsu K.
Planta 2013  237(5)  1379-91
Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L.
Liu D., Chen X., Liu J., Ye J., Guo Z.
J. Exp. Bot. 2012  63  3899-3912
The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance.
Liu H., Li X., Xiao J., Wang S.
Plant Methods 2012  8(1)  2
A convenient method for simultaneous quantification of multiple phytohormones and metabolites: application in study of rice-bacterium interaction.
Saeng-ngam S., Takpirom W., Buaboocha T., Chadchawan S.
Journal of Plant Biology 2012  55  198-208
The role of the OsCam1-1 salt stress sensor in ABA accumulation and salt tolerance in rice
Song S., Dai X., Zhang W.H.
J. Exp. Bot. 2012  63(15)  5559-68
A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice.
Ji X. , Dong B. , Shiran B. , Talbot M.J. , Edlington J.E. , Hughes T. , White R.G. , Gubler F. , Dolferus R.
Plant Physiol. 2011  156(2)  647-62
Control of abscisic Acid catabolism and abscisic Acid homeostasis is important for reproductive stage stress tolerance in cereals.
Mahmoud W Yaish, Ashraf El-Kereamy, Zhu T., Perrin H Beatty, Allen G Good, Yong-Mei Bi, Steven J Rothstein
PLoS Genet. 2010  6(9)  e1001098
The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice.
Zhu G,Ye N,Zhang J
Plant Cell Physiol. 2009  50  644-51
Glucose-induced delay of seed germination in rice is mediated by the suppression of ABA catabolism rather than an enhancement of ABA biosynthesis.
Welsch,R., Wust,F., Bar,C., Al-Babili,S. and Beyer,P.
Plant Physiol. 2008  147(1)  367-380
A third phytoene synthase is devoted to abiotic stress-induced abscisic acid formation in rice and defines functional diversification of phytoene synthase genes
Oliver SN,Dennis ES,Dolferus R
Plant Cell Physiol. 2007  48  1319-30
ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice.
TextPresso Search Search textpresso for NCED1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to jasmonic acid stimulus( GO:0009753 )
response to salt stress( GO:0009651 )
response to heat( GO:0009408 )
response to molecule of bacterial origin( GO:0002237 )
abscisic acid biosynthetic process( GO:0009688 )
9-cis-epoxycarotenoid dioxygenase activity( GO:0045549 )
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen( GO:0016702 )
seed germination( GO:0009845 )
response to cold( GO:0009409 )
response to hypoxia( GO:0001666 )
defense response to bacterium( GO:0042742 )
response to abscisic acid stimulus( GO:0009737 )
response to osmotic stress( GO:0006970 )
response to water deprivation( GO:0009414 )
Trait Ontology abscisic acid sensitivity( TO:0000615 )
osmotic response sensitivity( TO:0000095 )
drought tolerance( TO:0000276 )
cold tolerance( TO:0000303 )
abscisic acid content( TO:0002667 )
bacterial blight disease resistance( TO:0000175 )
oxygen sensitivity( TO:0000015 )
heat tolerance( TO:0000259 )
salt tolerance( TO:0006001 )
jasmonic acid sensitivity( TO:0000172 )
Plant Ontology 0 seed germination stage( PO:0007057 )
Related Strains
Phenotype images
Last updated
Jun 11, 2024