Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol EPR1
Gene Symbol Synonym OsEPR1, OsLHY, LHY
CGSNL Gene Name EARLY PHYTOCHROME RESPONSIVE 1
Gene Name Synonym OsLHY-like_chr.6, EARLY PHYTOCHROME RESPONSIVE1
Protein Name
Allele
Chromosome No. 6
Explanation MYB transcription factor. a rice ortholog of Arabidopsis gene for circadian clock component. OsLHY in Wei et al. 2021.
Trait Class Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Expression
Sequence/Locus
cDNA Accession No. AK119632
MSU ID LOC_Os06g51260.1
LOC_Os06g51260.2
RAP ID Os06g0728700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Zhao H., Ji Y., Jiang Y., Liang X., Qiao Y., Chen F., Wu L., Yu Y., Ma D.
Plants (Basel) 2025  14(12) 
Identification and Expression Analysis of Rice MYB Family Members in Response to Heat Stress.
Wei H., Wang X., He Y., Xu H., Wang L.
EMBO J. 2021  40(3)  e105086
Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis.
Jin J., Gui S., Li Q., Wang Y., Zhang H., Zhu Z., Chen H., Sun Y., Zou Y., Huang X., Ding Y.
J Integr Plant Biol 2019   
The transcription factor GATA10 regulates fertility conversion of a two-line hybrid tms5 mutant rice via the modulation of UbL40 expression.
Zhang N., Yu H., Yu H., Cai Y., Huang L., Xu C., Xiong G., Meng X., Wang J., Chen H., Liu G., Jing Y., Yuan Y., Liang Y., Li S., Smith S.M., Li J., Wang Y.
Plant Cell 2018  30(7)  1461-1475
A Core Regulatory Pathway Controlling Rice tiller angle Mediated by the <i>LAZY1</i>-Dependent Asymmetric Distribution of Auxin.
Matsuzaki J., Kawahara Y., Izawa T.
Plant Cell 2015  27(3)  633-48
Punctual Transcriptional Regulation by the Rice Circadian Clock under Fluctuating Field Conditions.
Wang W., Liu Z., Guo Z., Song G., Cheng Q., Jiang D., Zhu Y., Yang D.
BMC Genomics 2011  12  462
Comparative transcriptomes profiling of photoperiod-sensitive male sterile rice Nongken 58S during the male sterility transition between short-day and long-day.
DB Reference
Gramene ID -
Ontologies
Gene Ontology DNA binding( GO:0003677 )
circadian rhythm( GO:0007623 )
response to gravity( GO:0009629 )
pollen wall assembly( GO:0010208 )
anther development( GO:0048653 )
pollen development( GO:0009555 )
response to temperature stimulus( GO:0009266 )
response to heat( GO:0009408 )
Trait Ontology gravity response trait( TO:0002693 )
male sterility( TO:0000437 )
temperature response trait( TO:0000432 )
heat tolerance( TO:0000259 )
Plant Ontology anther development stage( PO:0001004 )
pollen development stage( PO:0001007 )
Related Strains
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Phenotype images
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Last updated
Oct 10, 2025

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