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Basic Information
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CGSNL Gene Symbol
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4CL5
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Gene Symbol Synonym
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Os4CL5, 4CL3, Os4CL3
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CGSNL Gene Name
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4-COUMARATE:COENZYME A LIGASE 5
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Gene Name Synonym
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4-coumarate:coenzyme A ligase 5, 4-hydroxycinnamate CoA ligase 3
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Protein Name
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4-COUMARATE:COENZYME A LIGASE 5
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Allele
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os4cl5
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Chromosome No.
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8
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Explanation
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Q6ZAC1. EC 6.2.1.12 Os4CL5 participates in defense against wounding. 4CL3 in Koshiba et al. 2013. GO:1990169: stress response to copper ion. GO:1990170: stress response to cadmium ion.
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Trait Class
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Biochemical character
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Vegetative organ - Leaf
Coloration - Anthocyanin
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK120964
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MSU ID
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LOC_Os08g34790.1
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RAP ID
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Os08g0448000
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Zhou H., Ma X., Yang J., Geng L., Qiu T., Fan X., Zhang K., Zhu F., Xie Y.
Stress Biol 2025 5(1) 72
OsNTL2 confers rice osmotic stress resilience through coordinated transcriptional regulation of the ASC-GSH redox cycle and cell wall biosynthesis.
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Zhang C., Jian L., Guan T., Wang Y., Pang H., Xu Y., Xing Y., Wang J., Kang Z., Zhao J.
PLoS Genet. 2025 21(5) e1011679
Coordinated transcriptomic and metabolomic responses in rice reveal lignin-based physical barriers as key mechanisms of nonhost resistance to rust fungi.
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Chen S., Tao Z., Shen Y., Yang R., Yan S., Chen Z., Sun B., Yang X.
Insect Science 2024
Magnaporthe oryzae infection triggers rice resistance to brown planthopper through the influence of jasmonic acid on the flavonoid biosynthesis pathway.
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ShangGuan X., Qi Y., Wang A., Ren Y., Wang Y., Xiao T., Shen Z., Wang Q., Xia Y.
Front Plant Sci 2022 13 1078113
OsGLP participates in the regulation of lignin synthesis and deposition in rice against copper and cadmium toxicity.
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Ninkuu V., Yan J., Zhang L., Fu Z., Yang T., Li S., Li B., Duan J., Ren J., Li G., Yang X., Zeng H.
Front Plant Sci 2022 13 980821
Hrip1 mediates rice cell wall fortification and phytoalexins elicitation to confer immunity against <i>Magnaporthe oryzae</i>.
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Xu R., Pan R., Zhang Y., Feng Y., Nath U.K., Gan Y., Shi C., Akhter D.
Int J Mol Sci 2021 22(18)
RNA-Seq-Based Profiling of <i>pl</i> Mutant Reveals Transcriptional Regulation of Anthocyanin Biosynthesis in Rice (<i>Oryza sativa</i> L.).
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Wang L., Yuan J., Ma Y., Jiao W., Ye W., Yang D.L., Yi C., Chen Z.J.
Mol Plant 2018 11(2) 300-314
Rice Interploidy Crosses Disrupt Epigenetic Regulation, Gene Expression, and Seed Development.
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Zhao S., Zhao L., Liu F., Wu Y., Zhu Z., Sun C., Tan L.
J Integr Plant Biol 2016 58(12) 983-996
NARROW AND ROLLED LEAF 2 regulates leaf shape, male fertility, and seed size in rice.
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Sun H., Li Y., Feng S., Zou W., Guo K., Fan C., Si S., Peng L.
Biochem. Biophys. Res. Commun. 2013 430(3) 1151-6
Analysis of five rice 4-coumarate:coenzyme A ligase enzyme activity and stress response for potential roles in lignin and flavonoid biosynthesis in rice.
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Zhang X., Rerksiri W., Liu A., Zhou X., Xiong H., Xiang J., Chen X., Xiong X.
Gene 2013 530(2) 185-92
Transcriptome profile reveals heat response mechanism at molecular and metabolic levels in rice flag leaf.
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Koshiba T.a, Hirose N.a, Mukai M.a, Yamamura M.a, Hattori T.a d, Suzuki S.a, Sakamoto M.b, Umezawa T.a c
Plant Biotechnology 2013 30 157-167
Characterization of 5-hydroxyconiferaldehyde O-methyltransferase in Oryza sativa
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Madana M R Ambavaram, Krishnan A., Kurniawan R Trijatmiko, Pereira A.
Plant Physiol. 2011 155(2) 916-31
Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice.
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Gui J., Shen J., Li L.
Plant Physiol. 2011 157(2) 574-86
Functional characterization of evolutionarily divergent 4-coumarate:coenzyme a ligases in rice.
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Clarice de Azevedo Souza, Barbazuk B., Steven G Ralph, Bohlmann J., Hamberger B., Carl J Douglas
New Phytol. 2008 179(4) 987-1003
Genome-wide analysis of a land plant-specific acyl:coenzyme A synthetase (ACS) gene family in Arabidopsis, poplar, rice and Physcomitrella.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to copper ion( GO:0046688 )
response to cadmium ion( GO:0046686 )
4-coumarate-CoA ligase activity( GO:0016207 )
lignan biosynthetic process( GO:0009807 )
phenylpropanoid metabolic process( GO:0009698 )
ATP binding( GO:0005524 )
response to heat( GO:0009408 )
defense response to fungus( GO:0050832 )
cell wall thickening( GO:0052386 )
anthocyanin biosynthetic process( GO:0009718 )
response to molecule of fungal origin( GO:0002238 )
lignin biosynthetic process( GO:0009809 )
response to jasmonic acid stimulus( GO:0009753 )
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Trait Ontology
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lignin content( TO:0000731 )
lignin biosynthesis trait( TO:0000733 )
blast disease( TO:0000074 )
copper sensitivity( TO:0000021 )
fungal disease resistance( TO:0000439 )
jasmonic acid sensitivity( TO:0000172 )
temperature response trait( TO:0000432 )
leaf color( TO:0000326 )
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Plant Ontology
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Related Strains
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Phenotype images
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Last updated
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Jul 27, 2026
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Update info.