Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol 4CL2
Gene Symbol Synonym Os4CL2
CGSNL Gene Name 4-COUMARATE:COENZYME A LIGASE 2
Gene Name Synonym 4-coumarate:coenzyme A ligase 2, 4-coumarate-CoA ligase 2
Protein Name 4-COUMARATE:COENZYME A LIGASE 2
Allele
Chromosome No. 2
Explanation Q42982. EC 6.2.1.12 Os4CL2 was probably involved in UV protective flavonol formation.
Trait Class Biochemical character
Coloration - Anthocyanin
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK105636
MSU ID LOC_Os02g46970.1
RAP ID Os02g0697400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Wu X., Yang L., Han J., Liu H., Chen G., Wang H., Feng X., Zhang W., Liu K., Zhang Z.
BMC Genomics 2025  26(1)  792
Integrated transcriptomic and metabolomic analysis unveils heat-tolerance-associated flavonoid metabolites and genes in the rice REL1-D mutant.
Um T., Choi J., Park T., Chung P.J., Jung S.E., Shim J.S., Kim Y.S., Choi I.Y., Park S.C., Oh S.J., Seo J.S., Kim J.K.
Plant Direct 2022  6(1)  e374
Rice <i>microRNA171f/SCL6</i> module enhances drought tolerance by regulation of flavonoid biosynthesis genes.
Li W., Wang K., Chern M., Liu Y., Zhu Z., Liu J., Zhu X., Yin J., Ran L., Xiong J., He K., Xu L., He M., Wang J., Liu J., Bi Y., Qing H., Li M., Hu K., Song L., Wang L., Qi T., Hou Q., Chen W., Li Y., Wang W., Chen X.
New Phytol. 2020  226(6)  1850-1863
Sclerenchyma cell thickening through enhanced lignification induced by OsMYB30 prevents fungal penetration of rice leaves.
Chen X., Tao Y., Ali A., Zhuang Z., Guo D., Guo Q., Riaz A., Zhang H., Xu P., Liao Y., Wang J., Sun C., Xiang Q., Wu X.
Int J Mol Sci 2019  20(10) 
Transcriptome and Proteome Profiling of Different Colored Rice Reveals Physiological Dynamics Involved in the Flavonoid Pathway.
Sun H., Li Y., Feng S., Zou W., Guo K., Fan C., Si S., Peng L.
Biochem. Biophys. Res. Commun. 2013  430(3)  1151-6
Analysis of five rice 4-coumarate:coenzyme A ligase enzyme activity and stress response for potential roles in lignin and flavonoid biosynthesis in rice.
Gui J., Shen J., Li L.
Plant Physiol. 2011  157(2)  574-86
Functional characterization of evolutionarily divergent 4-coumarate:coenzyme a ligases in rice.
Clarice de Azevedo Souza, Barbazuk B., Steven G Ralph, Bohlmann J., Hamberger B., Carl J Douglas
New Phytol. 2008  179(4)  987-1003
Genome-wide analysis of a land plant-specific acyl:coenzyme A synthetase (ACS) gene family in Arabidopsis, poplar, rice and Physcomitrella.
DB Reference
Gramene ID -
Ontologies
Gene Ontology 4-coumarate-CoA ligase activity( GO:0016207 )
ATP binding( GO:0005524 )
phenylpropanoid metabolic process( GO:0009698 )
flavonoid biosynthetic process( GO:0009813 )
Trait Ontology flavonoid content( TO:0000290 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Dec 9, 2025

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