Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol V2
Gene Symbol Synonym v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK
CGSNL Gene Name VIRESCENT 2
Gene Name Synonym virescent2, virescent 2, virescent-2, Gluanylate kinase, plastid/mitochondrial guanylate kinase
Protein Name GUANYLATE KINASE
Allele
Chromosome No. 3
Explanation GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. AB267728. This gene is essential for chloroplast differentiation (Sugimoto et al. 2007).
Trait Class Coloration - Chlorophyll
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Longevity
Character as QTL - Grain quality
Expression
Sequence/Locus
cDNA Accession No. AK106255
MSU ID LOC_Os03g20460.1
LOC_Os03g20460.2
RAP ID Os03g0320900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM) 77.0
Link map Classical linkage map
References
Li F., Ye H., Wang Y., Zhou J., Zhang G., Liu X., Lu X., Wang F., Chen Q., Chen G., Xiao Y., Tang W., Deng H.
Plants (Basel) 2024  13(7) 
Transcriptomic Profiling of Two Rice Thermo-Sensitive Genic Male Sterile Lines with Contrasting Seed Storability after Artificial Accelerated Aging Treatment.
Chen H., Wang Q., Fan M., Zhang X., Feng P., Zhu L., Wu J., Cheng X., Wang J.
Int J Mol Sci 2023  24(6) 
A Single Nucleotide Variation of <i>CRS2</i> Affected the Establishment of Photosynthetic System in Rice.
Xu J., Ji Z., Wang C., Xu F., Wang F., Zheng Y., Tang Y., Wei Z., Zhao T., Zhao K.
Front Plant Sci 2022  13  918673
<i>WATER-SOAKED SPOT1</i> Controls Chloroplast Development and leaf senescence <i>via</i> Regulating Reactive Oxygen Species Homeostasis in Rice.
Fang G., Yang S., Ruan B., Liu C., Zhang A., Jiang H., Ding S., Tian B., Zhang Y., Jahan N., Zhu L., Zhang G., Dong G., Zhang Q., Zeng D., Guo L., Gao Z., Qian Q.
Rice (N Y) 2020  13(1)  49
Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice.
Cheng R., Gong L., Li Z., Liang Y.K.
J. Plant Physiol. 2019  232  39-50
Rice BIG gene is required for seedling viability.
Lin D., Zheng K., Liu Z., Li Z., Teng S., Xu J., Dong Y.
Plant Genome 2018  11(1) 
Rice <i>TCM1</i> Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.
Ge C., Wang L., Ye W., Wu L., Cui Y., Chen P., Pan J., Zhang D., Hu J., Zeng D., Dong G., Qian Q., Guo L., Xue D.
Sci Rep 2017  7(1)  3298
Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.
Zhang Z., Cui X., Wang Y., Wu J., Gu X., Lu T.
Mol Plant 2017  10(1)  86-98
The RNA Editing Factor wsp1 Is Essential for Chloroplast Development in Rice.
Zheng K., Zhao J., Lin D., Chen J., Xu J., Zhou H., Teng S., Dong Y.
Rice (N Y) 2016  9(1)  13
The Rice TCM5 Gene Encoding a Novel Deg protease protein is Essential for Chloroplast Development under High Temperatures.
Chen F., Dong G., Wu L., Wang F., Yang X., Ma X., Wang H., Wu J., Zhang Y., Wang H., Qian Q., Yu Y.
Sci Rep 2016  6  32295
A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP synthase in Rice.
Kusumi K., Iba K.
Front Plant Sci 2014  5  386
Establishment of the chloroplast genetic system in rice during early leaf development and at low temperatures.
Dong H., Fei G.L., Wu C.Y., Wu F.Q., Sun Y.Y., Chen M.J., Ren Y.L., Zhou K.N., Cheng Z.J., Wang J.L., Jiang L., Zhang X., Guo X.P., Lei C.L., Su N., Wang H., Wan J.M.
Plant Physiol. 2013  162(4)  1867-80
A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants.
Sugimoto,H., Kusumi,K., Noguchi,K., Yano,M., Yoshimura,A. and Iba,K.
Plant J. 2007  52(3)  512-527
The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria
Sugimoto, H., K. Kusumi, Y. Tozawa, J. Yazaki, N. Kishimoto, S. Kikuchi and K. Iba
Plant Cell Physiol. 2004  45  985-996
The virescent-2, mutation inhibits translation of plastid transcripts for the plastid genetic system at an early stage of chloroplast differentiation.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1985  35(Suppl. 1)  204-205.
Linkage studies in rice.On the loci of some marker genes locating on the chromosome 5.
Iwata, N. and T. Omura
Jpn. J. Genet. 1984  59(3)  199-204.
Studies on the trisomics in rice plants (Oryza sativa L.). VI. An accomplishment of a trisomic series in japonica rice plants.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1979  29(Suppl. 2)  182-183.
Linkage studies in rice. New genes belonging to the 11th linkage group.
Omura, T., N. Iwata and H. Satoh
J. Fac. Agr. Kyushu Univ. 1978  23  85-93.
Linkage studies in rice (Oryza sativa L.). On some virescent and chlorina mutants.
Iwata, N., T. Omura and H. Satoh
Japan. J. Breed. 1978  28(Suppl. 1)  170-171.
Linkage studies in rice. The sequence of genes at the eight and eleventh linkage groups.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1977  27(Suppl. 1)  250-251.
Linkage studies in rice.Linkage groups for 6 genes newly described.
DB Reference
Gramene ID GR:0060981
Ontologies
Gene Ontology response to humidity( GO:0009270 )
response to heat( GO:0009408 )
response to temperature stimulus( GO:0009266 )
chlorophyll biosynthetic process( GO:0015995 )
Trait Ontology chlorophyll content( TO:0000495 )
leaf lamina color( TO:0000299 )
temperature response trait( TO:0000432 )
heat tolerance( TO:0000259 )
humidity related trait( TO:0000441 )
seed viability( TO:0000345 )
seed longevity( TO:0000435 )
vigor related trait( TO:0000250 )
percent germination( TO:0010001 )
Plant Ontology vascular leaf( PO:0009025 )
Related Strains
Stocks for Genes 1
F Lines 9
Backcross Fn Generation (T65) 5
Phenotype images
Click to full size image in new window
Photo from A. Yoshimura
Last updated
Sep 12, 2024

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