Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol C3H38
Gene Symbol Synonym OsC3H38, U2AF35B, OsU2AF35b, OsC3H41, C3H41
CGSNL Gene Name ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 38
Gene Name Synonym Splicing factor U2af small subunit B, U2 small nuclear ribonucleoprotein auxiliary factor small subunit B, U2 snRNP auxiliary factor small subunit B, U2 auxiliary factor 35 kDa subunit B, Zinc finger CCCH domain-containing protein 38, U2 snRNP auxiliary factor small subunit B, U2 auxiliary factor 35 kDa subunit B, U2 Small Nuclear Ribonucleoprotein Auxiliary Factor U2AF Subunit 35b, CCCH Zinc Finger Family Gene 41
Protein Name ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 38
Allele
Chromosome No. 5
Explanation Q6AUG0. Y18348. OsC3H41 in Wang et al. 2025.
Trait Class Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. AK070198
MSU ID LOC_Os05g48960.1
LOC_Os05g48960.2
LOC_Os05g48960.3
LOC_Os05g48960.4
RAP ID Os05g0564200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Liu J., Li X., Wang K., Wang T., Meng Y., Peng Z., Huang J., Huo J., Zhu X., Yang J., Fan Y., Xu F., Zhang Q., Wang Z., Wang Y., Chen H., Xu W.
Plant Biotechnol. J. 2025  23(4)  1308-1328
The splicing auxiliary factor OsU2AF35a enhances thermotolerance via protein separation and promoting proper splicing of OsHSA32 pre-mRNA in rice.
Cai L., Hao B., Xu Z., Cui S., Wu Q., Lee J., Hou H., Hu Y., Zhu L., Wang J., Li W., Chang K., Shao W., Zhu S., Gan X., Li C., Jiang L., Tian Y., Liu X., Liu S., Chen L., Wang H., Zhou S., Wan J.
Nat Commun 2025  16(1)  5329
ELD1 mediates photoperiodic flowering via OsCCA1 alternative splicing and interacts with phytochrome signaling in rice.
Wang Z., Li S., Wu H., Huang L., Fu L., Zhan C., Lu X., Yang L., Dai L., Zeng D.
Genes (Basel) 2025  16(4) 
Identification and Expression Analysis of CCCH Zinc Finger Family Genes in <i>Oryza sativa</i>.
Higuchi-Takeuchi M., Ichikawa T., Kondou Y., Matsui K., Hasegawa Y., Kawashima M., Sonoike K., Mori M., Hirochika H., Matsui M.
Plant Physiol. 2011  157(1)  96-108
Functional analysis of two isoforms of leaf-type Ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis.
Wang D,Guo Y,Wu C,Yang G,Li Y,Zheng C
BMC Genomics. 2008  9  44
Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
Domon,C., Lorkovic,Z.J., Valcarcel,J. and Filipowicz,W.
J. Biol. Chem. 1998  273(51)  34603-34610
Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to heat( GO:0009408 )
nucleotide binding( GO:0000166 )
DNA binding( GO:0003677 )
RNA binding( GO:0003723 )
nucleus( GO:0005634 )
mRNA processing( GO:0006397 )
RNA splicing( GO:0008380 )
zinc ion binding( GO:0008270 )
Trait Ontology heat tolerance( TO:0000259 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Oct 9, 2025

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