Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol ATG8B
Gene Symbol Synonym OsATG8b, Atg8b
CGSNL Gene Name AUTOPHAGY ASSOCIATED GENE 8B
Gene Name Synonym autophagy 8b, OsAuTophaGy8b, AUTOPHAGY RELATED8b
Protein Name
Allele osatg8b, osatg8b-1, osatg8b-2
Chromosome No. 4
Explanation Q7XPR1. GO:1901698: response to nitrogen compound. GO:0071705: nitrogen compound transport. TO:0020093: nitrogen content.
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
Vegetative organ - Root
Seed - Physiological traits
Character as QTL - Yield and productivity
Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
Coloration - Chlorophyll
Expression
Sequence/Locus
cDNA Accession No. AK121268
MSU ID LOC_Os04g53240.1
LOC_Os04g53240.2
LOC_Os04g53240.3
LOC_Os04g53240.4
RAP ID Os04g0624000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
-
Map
Locate(cM)
Link map Classical linkage map
References
Zhen X., Zheng N., Yu J., Bi C., Xu F.
PLoS ONE 2021  16(1)  e0244996
Autophagy mediates grain yield and nitrogen stress resistance by modulating nitrogen remobilization in rice.
Fan T., Yang W., Zeng X., Xu X., Xu Y., Fan X., Luo M., Tian C., Xia K., Zhang M.
Front Plant Sci 2020  11  588
A Rice Autophagy Gene <i>OsATG8b</i> Is Involved in Nitrogen Remobilization and Control of Grain Quality.
Jiang L., Lu Y., Zheng X., Yang X., Chen Y., Zhang T., Zhao X., Wang S., Zhao X., Song X., Zhang X., Peng J., Zheng H., Lin L., MacFarlane S., Liu Y., Chen J., Yan F.
New Phytol. 2020   
The plant protein NbP3IP directs degradation of Rice stripe virus p3 silencing suppressor protein to limit virus infection through interaction with the autophagy-related protein NbATG8.
Zhen X., Xu F., Zhang W., Li N., Li X.
PLoS ONE 2019  14(9)  e0223011
Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.
Izumi M., Hidema J., Wada S., Kondo E., Kurusu T., Kuchitsu K., Makino A., Ishida H.
Plant Physiol. 2015  167(4)  1307-20
Establishment of Monitoring Methods for Autophagy in Rice Reveals Autophagic Recycling of Chloroplasts and Root Plastids during Energy Limitation.
Xia K., Liu T., Ouyang J., Wang R., Fan T., Zhang M.
DNA Res. 2011  18(5)  363-77
Genome-wide identification, classification, and expression analysis of autophagy-associated gene homologues in rice (Oryza sativa L.).
Chung T., Suttangkakul A., Richard D Vierstra
Plant Physiol. 2009  149(1)  220-34
The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability.
TextPresso Search Search textpresso for ATG8B ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology positive regulation of autophagy( GO:0010508 )
regulation of nitrogen compound metabolic process( GO:0051171 )
autophagic vacuole formation( GO:0000045 )
cellular response to nitrogen starvation( GO:0006995 )
autophagic vacuole( GO:0005776 )
cytosol( GO:0005829 )
vacuole( GO:0005773 )
root development( GO:0048364 )
seed development( GO:0048316 )
nitrogen utilization( GO:0019740 )
nucleus( GO:0005634 )
cytoplasm( GO:0005737 )
membrane( GO:0016020 )
autophagic vacuole membrane( GO:0000421 )
microtubule( GO:0005874 )
autophagy( GO:0006914 )
protein transport( GO:0015031 )
CVT vesicle membrane( GO:0033110 )
response to starvation( GO:0042594 )
Trait Ontology nitrogen sensitivity( TO:0000011 )
seed quality( TO:0000162 )
grain yield( TO:0000396 )
grain number( TO:0002759 )
grain yield per plant( TO:0000449 )
hull color( TO:0000706 )
chalky endosperm( TO:0000266 )
soluble protein content( TO:0000325 )
root development trait( TO:0000656 )
plant dry weight( TO:0000352 )
nitrogen recycling( TO:0000506 )
growth and development trait( TO:0000357 )
total biomass yield( TO:0000457 )
chlorophyll content( TO:0000495 )
net photosynthetic rate( TO:0001027 )
grain number per plant( TO:0000440 )
1000-dehulled grain weight( TO:0000592 )
secondary branch number( TO:0000557 )
Plant Ontology seed development stage( PO:0001170 )
seed maturation stage( PO:0007632 )
leaf( PO:0025034 )
root( PO:0009005 )
Related Strains
-
Phenotype images
-
Last updated
Jan 18, 2022


/rice/oryzabase