Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol TIFY6A
Gene Symbol Synonym OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a
Gene Name Synonym Jasmonate ZIM-domain protein 9, Jasmonate ZIM-domain protein 3, Jasmonate Zim-Domain3
Allele osjaz9
Chromosome No. 8
Explanation Q6ZJU3. OsJAZ3 in Ye et al. (2009), Yamada et al. 2012, Wang et al. 2019, Kashihara et al. 2019, Sun et al. 2022. OsJAZ9 in Seo et al. (2011) and in Lee et al. (2913), Um et al. 2018. HQ858803. ZIM transcription factor. GO:2000022: regulation of jasmonic acid mediated signaling pathway.
Trait Class Vegetative organ - Root
Reproductive organ - Heading date
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK103459
MSU ID LOC_Os08g33160.1
RAP ID Os08g0428400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Sun B., Shang L., Li Y., Zhang Q., Chu Z., He S., Yang W., Ding X.
Int J Mol Sci 2022  23(9) 
Ectopic Expression of OsJAZs Alters Plant Defense and Development.
Kashihara K., Onohata T., Okamoto Y., Uji Y., Mochizuki S., Akimitsu K., Gomi K.
J. Plant Physiol. 2019  232  180-187
Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.
Wang M., Yang D., Ma F., Zhu M., Shi Z., Miao X.
Rice (N Y) 2019  12(1)  9
OsHLH61-OsbHLH96 influences rice defense to brown planthopper through regulating the pathogen-related genes.
Um T.Y., Lee H.Y., Lee S., Chang S.H., Chung P.J., Oh K.B., Kim J.K., Jang G., Choi Y.D.
Front Plant Sci 2018  9  1866
JASMONATE ZIM-DOMAIN PROTEIN 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.
Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S., Do Choi Y.
PLoS ONE 2013  8(1)  e52802
Oryza sativa COI homologues restore jasmonate signal transduction in Arabidopsis COI1-1 mutants.
Yamada S., Kano A., Tamaoki D., Miyamoto A., Shishido H., Miyoshi S., Taniguchi S., Akimitsu K., Gomi K.
Plant Cell Physiol. 2012  53(12)  2060-72
Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice.
Seo J.S. , Joo J. , Kim M.J. , Kim Y.K. , Nahm B.H. , Song S.I. , Cheong J.J. , Lee J.S. , Kim J.K. , Choi Y.D.
Plant J. 2011  65(6)  907-21
OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice.
Ye H,Du H,Tang N,Li X,Xiong L
Plant Mol. Biol. 2009  71(3)  291-305
Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice.
Yilmaz,A., Nishiyama,M.Y. Jr., Fuentes,B.G., Souza,G.M., Janies,D., Gray,J. and Grotewold,E.
Plant Physiol. 2009  149(1)  171-180
GRASSIUS: a platform for comparative regulatory genomics across the grasses
TextPresso Search Search textpresso for TIFY6A ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology photoperiodism, flowering( GO:0048573 )
nucleus( GO:0005634 )
response to wounding( GO:0009611 )
response to gibberellin stimulus( GO:0009739 )
response to jasmonic acid stimulus( GO:0009753 )
regulation of defense response( GO:0031347 )
jasmonic acid mediated signaling pathway( GO:0009867 )
gibberellic acid mediated signaling( GO:0009740 )
positive regulation of gibberellic acid mediated signaling( GO:0009939 )
Trait Ontology jasmonic acid sensitivity( TO:0000172 )
gibberellic acid sensitivity( TO:0000166 )
flowering time( TO:0002616 )
root length( TO:0000227 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Oct 14, 2022