Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol TIFY6A
Gene Symbol Synonym OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a
CGSNL Gene Name TIFY GENE 6A
Gene Name Synonym Jasmonate ZIM-domain protein 9, Jasmonate ZIM-domain protein 3, Jasmonate Zim-Domain3
Protein Name TIFY-DOMAIN PROTEIN 6A
Allele osjaz9
Chromosome No. 8
Explanation Q6ZJU3. The result of the pull-down assay showed that JA-Ile bound to most combinations of OsCOI2-OsJAZs (OsCOI2-OsJAZ1-13/15) (Okumura et al. 2023). OsJAZ3 in Ye et al. (2009), Yamada et al. 2012, Singh et al. 2015, Wang et al. 2019, Kashihara et al. 2019, Sun et al. 2022. OsJAZ9 in Seo et al. (2011) and in Lee et al. (2913), Um et al. 2018, Okumura et al. 2023. HQ858803. ZIM transcription factor. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:1990641: response to iron ion starvation. GO:0120127: response to zinc ion starvation.
Trait Class Vegetative organ - Root
Reproductive organ - Heading date
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK103459
MSU ID LOC_Os08g33160.1
LOC_Os08g33160.2
RAP ID Os08g0428400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Okumura T., Kitajima T., Kaji T., Urano H., Matsumoto K., Inagaki H., Miyamoto K., Okada K., Ueda M.
Biosci. Biotechnol. Biochem. 2023  87(10)  1122-1128
Difference in the ligand affinity among redundant plant hormone receptors of rice OsCOI1a/1b/2-OsJAZs.
Sun B., Shang L., Li Y., Zhang Q., Chu Z., He S., Yang W., Ding X.
Int J Mol Sci 2022  23(9) 
Ectopic Expression of OsJAZs Alters Plant Defense and Development.
Kashihara K., Onohata T., Okamoto Y., Uji Y., Mochizuki S., Akimitsu K., Gomi K.
J. Plant Physiol. 2019  232  180-187
Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.
Wang M., Yang D., Ma F., Zhu M., Shi Z., Miao X.
Rice (N Y) 2019  12(1)  9
OsHLH61-OsbHLH96 influences rice defense to brown planthopper through regulating the pathogen-related genes.
Um T.Y., Lee H.Y., Lee S., Chang S.H., Chung P.J., Oh K.B., Kim J.K., Jang G., Choi Y.D.
Front Plant Sci 2018  9  1866
JASMONATE ZIM-DOMAIN PROTEIN 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.
Singh A.P., Pandey B.K., Deveshwar P., Narnoliya L., Parida S.K., Giri J.
Front Plant Sci 2015  6  975
JAZ Repressors: Potential Involvement in Nutrients Deficiency Response in Rice and Chickpea.
Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S., Do Choi Y.
PLoS ONE 2013  8(1)  e52802
Oryza sativa COI homologues restore jasmonate signal transduction in Arabidopsis COI1-1 mutants.
Yamada S., Kano A., Tamaoki D., Miyamoto A., Shishido H., Miyoshi S., Taniguchi S., Akimitsu K., Gomi K.
Plant Cell Physiol. 2012  53(12)  2060-72
Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice.
Seo J.S. , Joo J. , Kim M.J. , Kim Y.K. , Nahm B.H. , Song S.I. , Cheong J.J. , Lee J.S. , Kim J.K. , Choi Y.D.
Plant J. 2011  65(6)  907-21
OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice.
Ye H,Du H,Tang N,Li X,Xiong L
Plant Mol. Biol. 2009  71(3)  291-305
Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice.
Yilmaz,A., Nishiyama,M.Y. Jr., Fuentes,B.G., Souza,G.M., Janies,D., Gray,J. and Grotewold,E.
Plant Physiol. 2009  149(1)  171-180
GRASSIUS: a platform for comparative regulatory genomics across the grasses
DB Reference
Gramene ID -
Ontologies
Gene Ontology cellular response to zinc ion starvation( GO:0034224 )
cellular response to iron ion starvation( GO:0010106 )
cellular response to potassium ion starvation( GO:0051365 )
cellular response to phosphate starvation( GO:0016036 )
response to starvation( GO:0042594 )
cellular response to nitrogen starvation( GO:0006995 )
positive regulation of gibberellic acid mediated signaling( GO:0009939 )
gibberellic acid mediated signaling( GO:0009740 )
jasmonic acid mediated signaling pathway( GO:0009867 )
regulation of defense response( GO:0031347 )
photoperiodism, flowering( GO:0048573 )
nucleus( GO:0005634 )
response to wounding( GO:0009611 )
response to gibberellin stimulus( GO:0009739 )
response to jasmonic acid stimulus( GO:0009753 )
Trait Ontology jasmonic acid sensitivity( TO:0000172 )
gibberellic acid sensitivity( TO:0000166 )
flowering time( TO:0002616 )
root length( TO:0000227 )
nitrogen sensitivity( TO:0000011 )
phosphorus sensitivity( TO:0000102 )
potassium sensitivity( TO:0000008 )
iron sensitivity( TO:0000224 )
zinc sensitivity( TO:0000351 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Mar 17, 2025


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