Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol TIFY11D
Gene Symbol Synonym OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12
Gene Name Synonym Jasmonate ZIM-domain protein 1, Jasmonate ZIM-domain protein 12
Chromosome No. 10
Explanation Q7XEZ1. XB21 interacting protein (XB21IP). miR5810-target. OsJAZ12 in Ye et al. (2009) and in Yamada et al. (2012), Wang et al. 2019, Kashihara et al. 2019, Zhang et al. 2019, Li et al. 2021, Kong et al. 2021, Gao et al. 2022, Tan et al. 2022, Sun et al. 2022, Mehra et al. 2022, Cui et al. 2023. OsJAZ1 in Seo et al.(2011) and in Lee et al.(2013), Cao et al. 2021, Wang et al. 2021. GO: 1903507: negative regulation of nucleic acid-templates transcription. GO:2000022: regulation of jasmonic acid mediated signaling pathway. a candidate gene for qHNA10 (QTL for N accumulation under high N conditions on chromosome 10). GO:1901698: response to nitrogen compound.
Trait Class Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Character as QTL - Yield and productivity
Tolerance and resistance - Disease resistance
Reproductive organ - panicle
Vegetative organ - Culm
Reproductive organ - Heading date
Reproductive organ - Spikelet, flower, glume, awn
Vegetative organ - Root
cDNA Accession No. AK061602
MSU ID LOC_Os10g25290.1
RAP ID Os10g0392400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Liu W.Z., Li Z.Y., Liu C., Yu X.T., Yu W.Q., Li P.
Genome 2023  66(6)  131-149
<i>Paenibacillus terrae</i> NK3-4 regulates the transcription of growth-related and stress resistance-related genes in rice.
Cui J., Nishide N., Mashiguchi K., Kuroha K., Miya M., Sugimoto K., Itoh J.I., Yamaguchi S., Izawa T.
Nat Commun 2023  14(1)  3191
Fertilization controls tiller numbers via transcriptional regulation of a MAX1-like gene in rice cultivation.
Panigrahy M., Panigrahi K.C.S., Poli Y., Ranga A., Majeed N.
Biology (Basel) 2022  11(5) 
Integrated Expression Analysis of Small RNA, Degradome and Microarray Reveals Complex Regulatory Action of miRNA during Prolonged Shade in Swarnaprabha Rice.
Mehra P., Pandey B.K., Verma L., Prusty A., Singh A.P., Sharma S., Malik N., Bennett M.J., Parida S.K., Giri J., Tyagi A.K.
Plant Direct 2022  6(5)  e401
<i>OsJAZ11</i> regulates spikelet and seed development in rice.
Sun B., Shang L., Li Y., Zhang Q., Chu Z., He S., Yang W., Ding X.
Int J Mol Sci 2022  23(9) 
Ectopic Expression of OsJAZs Alters Plant Defense and Development.
Tan X., Zhang H., Yang Z., Wei Z., Li Y., Chen J., Sun Z.
PLoS Pathog. 2022  18(5)  e1010548
NF-YA transcription factors suppress jasmonic acid-mediated antiviral defense and facilitate viral infection in rice.
Gao Y., Xiang X., Zhang Y., Cao Y., Wang B., Zhang Y., Wang C., Jiang M., Duan W., Chen D., Zhan X., Cheng S., Liu Q., Cao L.
Int J Mol Sci 2022  23(2) 
Disruption of <i>OsPHD1</i>, Encoding a UDP-glucose epimerase, Causes JA Accumulation and Enhanced Bacterial Blight Resistance in Rice.
Li L., Zhang H., Chen C., Huang H., Tan X., Wei Z., Li J., Yan F., Zhang C., Chen J., Sun Z.
Proc. Natl. Acad. Sci. U.S.A. 2021  118(11) 
A class of independently evolved transcriptional repressors in plant RNA viruses facilitates viral infection and vector feeding.
Wang L., Cao S., Wang P., Lu K., Song Q., Zhao F.J., Chen Z.J.
Proc. Natl. Acad. Sci. U.S.A. 2021  118(13) 
DNA hypomethylation in tetraploid rice potentiates stress-responsive gene expression for salt tolerance.
Cao Y., Zhang Y., Chen Y., Yu N., Liaqat S., Wu W., Chen D., Cheng S., Wei X., Cao L., Zhang Y., Liu Q.
Rice (N Y) 2021  14(1)  36
OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice.
Kong Y., Wang G., Chen X., Li L., Zhang X., Chen S., He Y., Hong G.
Plant Cell Environ. 2021   
OsPHR2 modulates phosphate starvation-induced OsMYC2 signalling and resistance to Xanthomonas oryzae pv. oryzae.
Xin W., Wang J., Li J., Zhao H., Liu H., Zheng H., Yang L., Wang C., Yang F., Chen J., Zou D.
Front Plant Sci 2021  12  670861
Candidate Gene Analysis for Nitrogen Absorption and Utilization in Japonica Rice at the Seedling Stage Based on a Genome-Wide Association Study.
Zhang H., Tan X., Li L., He Y., Hong G., Li J., Lin L., Cheng Y., Yan F., Chen J., Sun Z.
Mol. Plant Pathol. 2019  20(8)  1093-1104
Suppression of auxin signalling promotes rice susceptibility to Rice black streaked dwarf virus infection.
Wang J., Zhang Q., Wang Y., Huang J., Luo N., Wei S., Jin J.
Rice (N Y) 2019  12(1)  6
Analysing the rice young panicle transcriptome reveals the gene regulatory network controlled by TRIANGULAR HULL1.
Kashihara K., Onohata T., Okamoto Y., Uji Y., Mochizuki S., Akimitsu K., Gomi K.
J. Plant Physiol. 2019  232  180-187
Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.
Ma J., Chen J., Wang M., Ren Y., Wang S., Lei C., Cheng Z., Sodmergen
J. Exp. Bot. 2018  69(5)  1051-1064
Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.
Yan J., Yao R., Chen L., Li S., Gu M., Nan F., Xie D.
Mol Plant 2018  11(10)  1237-1247
Dynamic Perception of Jasmonates by the F-Box Protein COI1.
Hakata M., Muramatsu M., Nakamura H., Hara N., Kishimoto M., Iida-Okada K., Kajikawa M., Imai-Toki N., Toki S., Nagamura Y., Yamakawa H., Ichikawa H.
Biosci. Biotechnol. Biochem. 2017  81(5)  906-913
Overexpression of TIFY genes promotes plant growth in rice through jasmonate signaling.
Caddell D.F., Park C.J., Thomas N.C., Canlas P.E., Ronald P.C.
Rice (N Y) 2017  10(1)  23
Silencing of the Rice Gene LRR1 Compromises Rice XA21 transcript Accumulation and XA21-Mediated Immunity.
Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S., Do Choi Y.
PLoS ONE 2013  8(1)  e52802
Oryza sativa COI homologues restore jasmonate signal transduction in Arabidopsis COI1-1 mutants.
Yamada S., Kano A., Tamaoki D., Miyamoto A., Shishido H., Miyoshi S., Taniguchi S., Akimitsu K., Gomi K.
Plant Cell Physiol. 2012  53(12)  2060-72
Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice.
Seo J.S. , Joo J. , Kim M.J. , Kim Y.K. , Nahm B.H. , Song S.I. , Cheong J.J. , Lee J.S. , Kim J.K. , Choi Y.D.
Plant J. 2011  65(6)  907-21
OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice.
Ye H,Du H,Tang N,Li X,Xiong L
Plant Mol. Biol. 2009  71(3)  291-305
Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice.
TextPresso Search Search textpresso for TIFY11D ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to symbiotic bacterium( GO:0009609 )
response to bacterium( GO:0009617 )
cellular response to phosphate starvation( GO:0016036 )
response to salt stress( GO:0009651 )
defense response to bacterium( GO:0042742 )
photoperiodism, flowering( GO:0048573 )
jasmonic acid mediated signaling pathway( GO:0009867 )
response to starvation( GO:0042594 )
transcription corepressor activity( GO:0003714 )
regulation of defense response( GO:0031347 )
regulation of transcription, DNA-dependent( GO:0006355 )
response to wounding( GO:0009611 )
transcription, DNA-dependent( GO:0006351 )
nucleus( GO:0005634 )
response to jasmonic acid stimulus( GO:0009753 )
defense response to virus( GO:0051607 )
Trait Ontology drought tolerance( TO:0000276 )
flag leaf length( TO:0002757 )
black streak dwarf virus resistance( TO:0000020 )
panicle length( TO:0000040 )
viral disease resistance( TO:0000148 )
nitrogen sensitivity( TO:0000011 )
jasmonic acid sensitivity( TO:0000172 )
grain weight( TO:0000590 )
stem length( TO:0000576 )
flower number( TO:0002736 )
days to heading( TO:0000137 )
spikelet fertility( TO:0000180 )
plant height( TO:0000207 )
flowering time( TO:0002616 )
root length( TO:0000227 )
bacterial disease resistance( TO:0000315 )
salt tolerance( TO:0006001 )
phosphorus sensitivity( TO:0000102 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Oct 12, 2023