Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol GLT1
Gene Name Synonym NADH-glutamate synthase 1, glutamate synthase, NADH-glutamate synthase, NADH-Glu synthase, Glutamate synthase (NADPH) small chain, NADH-dependent glutamate synthase1, NADH-dependent glutamate synthase 1
Allele nadh-gogat1, OsGOGAT1-D1, OsGOGAT1-D2
Chromosome No. 1
Explanation AB008845, AB001916. Q0JKD0. D16060. AY427565 (promoter). GO:0097054:L-glutamate biosynthetic process. TO:0020098: nitrate sensitivity. TO:0020093: nitrogen content. GO:0071705: nitrogen compound transport. GO:1901698: response to nitrogen compound. GO:0090548: response to nitrate starvation.
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
cDNA Accession No. AK105755
MSU ID LOC_Os01g48960.1
RAP ID Os01g0681900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Jiang M., Song Y., Yang R., Zheng C., Zheng Y., Zhang H., Li S., Tan Y., Huang J., Shu Q., Li R.
Plant Commun 2023    100674
Melatonin activates the OsbZIP79-OsABI5 module that orchestrates nitrogen and ROS homeostasis to alleviate nitrogen-limitation stress in rice.
Seo J.S., Kim S.H., Shim J.S., Um T., Oh N., Park T., Kim Y.S., Oh S.J., Kim J.K.
Plant Physiol. 2023   
The rice NUCLEAR FACTOR-YA5 and MICRORNA169a module promotes nitrogen utilization during nitrogen deficiency.
Kabange N.R., Park S.Y., Lee J.Y., Shin D., Lee S.M., Kwon Y., Cha J.K., Cho J.H., Duyen D.V., Ko J.M., Lee J.H.
Int J Mol Sci 2021  22(4) 
New Insights into the Transcriptional Regulation of Genes Involved in the Nitrogen Use Efficiency under Potassium Chlorate in Rice (<i>Oryza sativa</i> L.).
Jagadhesan B., Sathee L., Meena H.S., Jha S.K., Chinnusamy V., Kumar A., Kumar S.
Sci Rep 2020  10(1)  9368
Genome wide analysis of NLP transcription factors reveals their role in nitrogen stress tolerance of rice.
Lee S., Marmagne A., Park J., Fabien C., Yim Y., Kim S.J., Kim T.H., Lim P.O., Masclaux-Daubresse C., Nam H.G.
Plant J. 2020  103(1)  7-20
Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation.
Yi J., Gao J., Zhang W., Zhao C., Wang Y., Zhen X.
Front Plant Sci 2019  10  1061
Differential Uptake and Utilization of Two Forms of Nitrogen in <i>Japonica</i> Rice Cultivars From North-Eastern China.
Wang W., Hu B., Yuan D., Liu Y., Che R., Hu Y., Ou S., Liu Y., Zhang Z., Wang H., Li H., Jiang Z., Zhang Z., Gao X., Qiu Y., Meng X., Liu Y., Bai Y., Liang Y., Wang Y., Zhang L., Li L., Sodmergen, Jing H., Li J., Chu C.
Plant Cell 2018  30(3)  638-651
Expression of the Nitrate Transporter Gene <i>OsNRT1.1A/OsNPF6.3</i> Confers High Yield and Early Maturation in Rice.
Ohashi M., Ishiyama K., Kusano M., Fukushima A., Kojima S., Hanada A., Kanno K., Hayakawa T., Seto Y., Kyozuka J., Yamaguchi S., Yamaya T.
Plant J. 2015  81(2)  347-56
Lack of cytosolic glutamine synthetase1;2 in vascular tissues of axillary buds causes severe reduction in their outgrowth and disorder of metabolic balance in rice seedlings.
Yamaya T., Kusano M.
J. Exp. Bot. 2014   
Evidence supporting distinct functions of three cytosolic glutamine synthetases and two NADH-glutamate synthases in rice.
Zhang Y., Tan L., Zhu Z., Yuan L., Xie D., Sun C.
Plant J. 2014   
TOND1 confers tolerance to nitrogen deficiency in rice.
Yang B.a, Wang X.M.a, Ma H.Y.a, Jia Y.a, Li X.b, Dai C.C.a
Plant Growth Regul. 2014  73  165-179
Effects of the fungal endophyte Phomopsis liquidambari on nitrogen uptake and metabolism in rice
Wang H., Ahan J., Wu Z., Shi D., Liu B., Yang C.
Plant Soil 2012  355  131-147
Alteration of nitrogen metabolism in rice variety 'Nipponbare' induced by alkali stress
Wang H., Wu Z., Han J., Zheng W., Yang C.
PLoS ONE 2012  7(5)  e37817
Comparison of ion balance and nitrogen metabolism in old and young leaves of alkali-stressed rice plants.
Kusano M,Tabuchi M,Fukushima A,Funayama K,Diaz C,Kobayashi M,Hayashi N,Tsuchiya YN,Takahashi H,Kamata A,Yamaya T,Saito K
Plant J. 2011  66(3)  456-66
Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice.
Obara M., Takeda T., Hayakawa T., Yamaya T.
Soil Science and Plant Nutrition 2011  57  80-92
Mapping quantitative trait loci controlling root length in rice seedlings grown with low or sufficient NH+4 supply using backcross recombinant lines derived from a cross between Oryza sativa L. and Oryza glaberrima Steud
Tamura W., Hidaka Y., Tabuchi M., Kojima S., Hayakawa T., SATO T., Obara M., Kojima M., Sakakibara H., Yamaya T.
Amino Acids 2010  39(4)  1003-12
Reverse genetics approach to characterize a function of NADH-glutamate synthase1 in rice plants.
Tabuchi,M., Abiko,T. and Yamaya,T.
J. Exp. Bot. 2007  58(9)  2319-2327
Assimilation of ammonium ions and reutilization of nitrogen in rice (Oryza sativa L.)
Qu,L.Q. and Takaiwa,F.
Plant Biotechnol J. 2004  2(2)  113-125
Evaluation of tissue specificity and expression strength of rice seed component gene promoters in transgenic rice
Hayakawa,T., Sakai,T., Ishiyama,K., Hirose,N., Nakajima,H., Takezawa,M., Naito,K., Hino-Nakayama,M., Akagawa,T., Goto,S. and Yamaya,T.
Plant Biotechnol. 2003  20(1)  43-55
Organization and structure of ferredoxin-dependent glutamate synthase gene and intracellular localization of the enzyme protein in rice plants
Hirose N., Yamaya T.
Plant Physiol. 1999  121(3)  805-812
Okadaic Acid Mimics Nitrogen-Stimulated Transcription of the NADH-glutamate synthase Gene in Rice Cell Cultures.
Goto,S., Akagawa,T., Kojima,S., Hayakawa,T. and Yamaya,T.
Biochim. Biophys. Acta 1998  1387(1-2)  298-308
Organization and structure of NADH-dependent glutamate synthase gene from rice plants.
Watanabe S., Sakai T., Goto S., Yaginuma T., Hayakawa T., Yamaya T.
Plant Cell Physiol. 1996  37(7)  1034-1037
Expression of NADH-Dependent Glutamate Synthase in Response to the Supply of Nitrogen in Rice Cells in Suspension Culture
Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994  6(4)  615-624
Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
TextPresso Search Search textpresso for GLT1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology cellular response to nitrogen starvation( GO:0006995 )
response to nutrient levels( GO:0031667 )
response to chlorate( GO:0010157 )
response to starvation( GO:0042594 )
nitrogen utilization( GO:0019740 )
3 iron, 4 sulfur cluster binding( GO:0051538 )
developmental growth( GO:0048589 )
FMN binding( GO:0010181 )
glutamate synthase (NADH) activity( GO:0016040 )
FAD binding( GO:0050660 )
plastid( GO:0009536 )
chloroplast( GO:0009507 )
ammonia assimilation cycle( GO:0019676 )
glutamate biosynthetic process( GO:0006537 )
iron ion binding( GO:0005506 )
response to ammonium ion( GO:0060359 )
response to nitrate( GO:0010167 )
Trait Ontology tiller number( TO:0000346 )
yield trait( TO:0000371 )
tillering ability( TO:0000329 )
panicle number( TO:0000152 )
grain yield( TO:0000396 )
protein content( TO:0000598 )
nitrogen sensitivity( TO:0000011 )
plant growth hormone sensitivity( TO:0000401 )
Plant Ontology axillary shoot system( PO:0006343 )
axillary bud( PO:0004709 )
root( PO:0009005 )
Related Strains
Phenotype images
Last updated
Jan 17, 2024