Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol BH4
Gene Symbol Synonym Bh4, OsBH4, OsATL14, ATL14
CGSNL Gene Name BLACK HULL 4
Gene Name Synonym Black hull 4, black husk 4, amino acid transporter-like 14
Protein Name AMINO ACID TRANSPORTER
Allele
Chromosome No. 4
Explanation LOC_Os04g38660/LOC_Os04g38670. cDNA from W1943 (FQ377518), cDNA from Guangluai 4 (FQ377519), ORW1943Ba0077G13 (FQ377585), and Bh4 genomic sequences of 52 cultivated and wild rice varieties (FQ377520-FQ377566 and FQ377579-FQ377583). KC128691 to KC128808. Os04g0460000 (not found in RapDB, Ncbi and UniProt).
Trait Class Biochemical character
Coloration - Others
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Os04g38660.1
LOC_Os04g38670.1
RAP ID Os04g0460200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Li B., Jia Y., Xu L., Zhang S., Long Z., Wang R., Guo Y., Zhang W., Jiao C., Li C., Xu Y.
Plant Biotechnol. J. 2024  22(5)  1282-1298
Transcriptional convergence after repeated duplication of an amino acid transporter gene leads to the independent emergence of the black husk/pericarp trait in barley and rice.
Zhao Q., Feng Q., Lu H., Li Y., Wang A., Tian Q., Zhan Q., Lu Y., Zhang L., Huang T., Wang Y., Fan D., Zhao Y., Wang Z., Zhou C., Chen J., Zhu C., Li W., Weng Q., Xu Q., Wang Z.X., Wei X., Han B., Huang X.
Nat. Genet. 2018  50(2)  278-284
Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.
Wang W., Mauleon R., Hu Z., Chebotarov D., Tai S., Wu Z., Li M., Zheng T., Fuentes R.R., Zhang F., Mansueto L., Copetti D., Sanciangco M., Palis K.C., Xu J., Sun C., Fu B., Zhang H., Gao Y., Zhao X., Shen F., Cui X., Yu H., Li Z., Chen M., Detras J., Zhou Y., Zhang X., Zhao Y., Kudrna D., Wang C., Li R., Jia B., Lu J., He X., Dong Z., Xu J., Li Y., Wang M., Shi J., Li J., Zhang D., Lee S., Hu W., Poliakov A., Dubchak I., Ulat V.J., Borja F.N., Mendoza J.R., Ali J., Li J., Gao Q., Niu Y., Yue Z., Naredo M.E.B., Talag J., Wang X., Li J., Fang X., Yin Y., Glaszmann J.C., Zhang J., Li J., Hamilton R.S., Wing R.A., Ruan J., Zhang G., Wei C., Alexandrov N., McNally K.L., Li Z., Leung H.
Nature 2018  557(7703)  43-49
Genomic variation in 3,010 diverse accessions of Asian cultivated rice.
Li L.F., Li Y.L., Jia Y., Caicedo A.L., Olsen K.M.
Nat. Genet. 2017  49(5)  811-814
Signatures of adaptation in the weedy rice genome.
Vigueira,C.C., Li,W. and Olsen,K.M.
J. Evol. Biol. 2013  26(8)  1738-1749
The role of Bh4 in parallel evolution of hull colour in domesticated and weedy rice
Zhao H., Ma H., Yu L., Wang X., Zhao J.
PLoS ONE 2012  7(11)  e49210
Genome-wide survey and expression analysis of amino acid transporter gene family in rice (Oryza sativa L.).
Zhu B,Si L,Wang Z,Zhu J,Shangguan Y,Lu D,Zhou Y,Fan D,Li C,Lin H,Qian Q,Sang T,Zhou B,Minobe Y,Han B
Plant Physiol. 2011  155（3)  1301-11
Genetic Control of a Transition from Black to Straw-white Seed Hull in Rice Domestication.
DB Reference
Gramene ID -
Ontologies
Gene Ontology pigmentation( GO:0043473 )
integral to membrane( GO:0016021 )
Trait Ontology seed coat color( TO:0000190 )
lemma and palea color( TO:0000264 )
Plant Ontology seed( PO:0009010 )
Related Strains
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Phenotype images
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Last updated
May 29, 2024

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