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Basic Information
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CGSNL Gene Symbol
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JAR1
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Gene Symbol Synonym
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OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
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CGSNL Gene Name
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JASMONYL-L-ISOLEUCINE SYNTHASE 1
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Gene Name Synonym
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jasmonyl-L-isoleucine synthase 1, JASMONATE RESISTANT 1, GRETCHEN HAGEN 3.5, JA-Ile synthetase 1, Gretchen Hagen 3 protein 5
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Protein Name
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JASMONYL-L-ISOLEUCINE SYNTHASE 1
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Allele
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osjar1, osjar1-1, osjar1-2, osjar1-3, osgh3-5, jar1, jar1-1, Osjar1#1, Osjar1#2
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Chromosome No.
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5
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Explanation
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Q6I581. GO:1903338: regulation of cell wall organization or biogenesis. GO:1902427: regulation of water channel activity.
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Trait Class
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Biochemical character
Tolerance and resistance - Disease resistance
Tolerance and resistance - Insect resistance
Reproductive organ - Pollination, fertilization, fertility
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK071721
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MSU ID
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LOC_Os05g50890.1
LOC_Os05g50890.2
LOC_Os05g50890.3
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RAP ID
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Os05g0586200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Wang B., Li M., Chen J., Chen L.
Front Plant Sci 2025 16 1644853
Genome-wide comprehensive analysis the molecular phylogenetic evolution, functional divergence and tissue-specific expression of <i>GH3</i> gene family in <i>Salvia miltiorrhiza, Arabidopsis thaliana</i>, and Oryza sativa.
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Zhang H., Guo D., Lei Y., Lozano-Torres JL., Deng Y., Xu J., Hu L.
New Phytol. 2024
Cover crop rotation suppresses root-knot nematode infection by shaping soil microbiota.
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Gou Y., Heng Y., Ding W., Xu C., Tan Q., Li Y., Fang Y., Li X., Zhou D., Zhu X., Zhang M., Ye R., Wang H., Shen R.
Nat Commun 2024 15(1) 2262
Natural variation in OsMYB8 confers diurnal floret opening time divergence between indica and japonica subspecies.
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Wang L., Xu G., Li L., Ruan M., Bennion A., Wang G.L., Li R., Qu S.
Proc. Natl. Acad. Sci. U.S.A. 2023 120(13) e2211102120
The OsBDR1-MPK3 module negatively regulates blast resistance by suppressing the jasmonate signaling and terpenoid biosynthesis pathway.
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Wang X., Cheng R., Xu D., Huang R., Li H., Jin L., Wu Y., Tang J., Sun C., Peng D., Chu C., Guo X.
Nat Commun 2023 14(1) 3354
MG1 interacts with a protease inhibitor and confers resistance to rice root-knot nematode.
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Hu B., Zhou Y., Zhou Z., Sun B., Zhou F., Yin C., Ma W., Chen H., Lin Y.
Plant Biotechnol. J. 2021
Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.
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Wang L., Cao S., Wang P., Lu K., Song Q., Zhao F.J., Chen Z.J.
Proc. Natl. Acad. Sci. U.S.A. 2021 118(13)
DNA hypomethylation in tetraploid rice potentiates stress-responsive gene expression for salt tolerance.
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Meng F., Yang C., Cao J., Chen H., Pang J., Zhao Q., Wang Z., Qing Fu Z., Liu J.
J Integr Plant Biol 2020
A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.
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Zhang H., Li L., He Y., Qin Q., Chen C., Wei Z., Tan X., Xie K., Zhang R., Hong G., Li J., Li J., Yan C., Yan F., Li Y., Chen J., Sun Z.
Proc. Natl. Acad. Sci. U.S.A. 2020 117(16) 9112-9121
Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.
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Yu Y., Zhou Y.F., Feng Y.Z., He H., Lian J.P., Yang Y.W., Lei M.Q., Zhang Y.C., Chen Y.Q.
Plant Biotechnol. J. 2020 18(3) 679-690
Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.
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Ye M., Glauser G., Lou Y., Erb M., Hu L.
Plant Cell 2019 31(3) 687-698
Molecular Dissection of Early Defense Signaling Underlying Volatile-Mediated Defense Regulation and Herbivore Resistance in Rice.
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Hazman M., Martin Sühnel, Sandra Schäfer, Zumsteg J., Agnès Lesot, Fréderic Beltran, Marquis V., Herrgott L., Miesch L., Riemann M., Heitz T.
Rice (N Y) 2019 12(1) 45
Characterization of Jasmonoyl-Isoleucine (JA-Ile) Hormonal Catabolic Pathways in Rice upon Wounding and Salt Stress.
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Ke Y., Kang Y., Wu M., Liu H., Hui S., Zhang Q., Li X., Xiao J., Wang S.
Rice (N Y) 2019 12(1) 25
Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.
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Kong W., Zhong H., Deng X., Gautam M., Gong Z., Zhang Y., Zhao G., Liu C., Li Y.
Plants (Basel) 2019 8(2)
Evolutionary Analysis of <i>GH3</i> Genes in Six <i>Oryza</i> Species/Subspecies and Their Expression under Salinity Stress in <i>Oryza sativa</i> ssp. <i>japonica</i>.
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Chen Z., Chen T., Sathe A.P., He Y., Zhang X.B., Wu J.L.
Int J Mol Sci 2018 19(12)
Identification of a Novel Semi-Dominant Spotted-Leaf Mutant with Enhanced Resistance to <i>Xanthomonas</i><i>oryzae</i> pv. <i>oryzae</i> in Rice.
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Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018 9 1528
Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.
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Ogawa S., Kawahara-Miki R., Miyamoto K., Yamane H., Nojiri H., Tsujii Y., Okada K.
Biochem. Biophys. Res. Commun. 2017 486(3) 796-803
OsMYC2 mediates numerous defence-related transcriptional changes via jasmonic acid signalling in rice.
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Yang J., Yuan Z., Meng Q., Huang G., Périn C., Bureau C., Meunier A.C., Ingouff M., Bennett M.J., Liang W., Zhang D.
Front Plant Sci 2017 8 256
Dynamic Regulation of Auxin Response during Rice Development Revealed by Newly Established Hormone Biosensor Markers.
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Yang C., Li W., Cao J., Meng F., Yu Y., Huang J., Jiang L., Liu M., Zhang Z., Chen X., Miyamoto K., Yamane H., Zhang J., Chen S., Liu J.
Plant J. 2016
Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.
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Chen Y., Ma J., Anthony J Miller, Luo B., Wang M., Zhu Z., Pieter B F Ouwerkerk
Plant Cell Physiol. 2016 57(7) 1530-1543
OsCHX14 is Involved in the K+ Homeostasis in Rice (Oryza sativa) Flowers.
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You Q., Zhai K., Yang D., Yang W., Wu J., Liu J., Pan W., Wang J., Zhu X., Jian Y., Liu J., Zhang Y., Deng Y., Li Q., Lou Y., Xie Q., He Z.
Cell Host Microbe 2016 20(6) 758-769
An E3 Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum disease resistance.
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Tanabe K., Hojo Y., Shinya T., Galis I.
J Integr Plant Biol 2016
Molecular evidence for biochemical diversification of phenolamide biosynthesis in rice plants.
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Xu Y., Zong W., Hou X., Yao J., Liu H., Li X., Zhao Y., Xiong L.
Plant J. 2015 83(5) 806-17
OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
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Svyatyna K., Jikumaru Y., Brendel R., Reichelt M., Mithöfer A., Takano M., Kamiya Y., Nick P., Riemann M.
Plant Cell Environ. 2014 37(4) 827-39
Light induces jasmonate-isoleucine conjugation via OsJAR1-dependent and -independent pathways in rice.
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Zhang S., Wang S., Xu Y., Yu C., Shen C., Qian Q., Geisler M., Jiang D.A., Qi Y.
Plant Cell Environ. 2014
The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
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Xiao Y., Chen Y., Charnikhova T., Mulder P.P., Heijmans J., Hoogenboom A., Agalou A., Michel C., Morel J.B., Dreni L., Kater M.M., Bouwmeester H., Wang M., Zhu Z., Ouwerkerk P.B.
Plant Mol. Biol. 2014 86(1-2) 19-33
OsJAR1 is required for JA-regulated floret opening and anther dehiscence in rice.
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Fukumoto K., Alamgir K.M., Yamashita Y., Mori I.C., Matsuura H., Galis I.
J Integr Plant Biol 2013 55(8) 775-84
Response of rice to insect elicitors and the role of OsJAR1 in wound and herbivory-induced JA-Ile accumulation.
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Shimizu T., Miyamoto K., Miyamoto K., Minami E., Nishizawa Y., Iino M., Nojiri H., Yamane H., Okada K.
Biosci. Biotechnol. Biochem. 2013 77(7) 1556-64
OsJAR1 Contributes Mainly to Biosynthesis of the Stress-Induced Jasmonoyl-Isoleucine Involved in Defense Responses in Rice.
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Du H., Wu N., Fu J., Wang S., Li X., Xiao J., Xiong L.
J. Exp. Bot. 2012 63(18) 6467-80
A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice.
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Wakuta S. , Suzuki E. , Saburi W. , Matsuura H. , Nabeta K. , Imai R. , Matsui H.
Biochem. Biophys. Res. Commun. 2011 409(4) 634-9
OsJAR1 and OsJAR2 are jasmonyl-l-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling.
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Jain M., Kaur N., Akhilesh K Tyagi, Jitendra P Khurana
Funct. Integr. Genomics 2006 6(1) 36-46
The auxin-responsive GH3 gene family in rice (Oryza sativa).
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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vacuole( GO:0005773 )
chloroplast( GO:0009507 )
red, far-red light phototransduction( GO:0009585 )
systemic acquired resistance( GO:0009627 )
response to jasmonic acid stimulus( GO:0009753 )
photomorphogenesis( GO:0009640 )
jasmonic acid metabolic process( GO:0009694 )
auxin mediated signaling pathway( GO:0009734 )
jasmonic acid and ethylene-dependent systemic resistance( GO:0009861 )
induced systemic resistance, jasmonic acid mediated signaling pathway( GO:0009864 )
regulation of stomatal movement( GO:0010119 )
response to ozone( GO:0010193 )
negative regulation of defense response( GO:0031348 )
adenylyltransferase activity( GO:0070566 )
jasmonic acid mediated signaling pathway( GO:0009867 )
anther dehiscence( GO:0009901 )
response to salt stress( GO:0009651 )
response to wounding( GO:0009611 )
jasmonate-amino synthetase activity( GO:0080123 )
defense response( GO:0006952 )
defense response to fungus( GO:0050832 )
phytoalexin biosynthetic process( GO:0052315 )
response to copper ion( GO:0046688 )
defense response to nematode( GO:0002215 )
response to bacterium( GO:0009617 )
response to fungus( GO:0009620 )
response to auxin stimulus( GO:0009733 )
jasmonic acid biosynthetic process( GO:0009695 )
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Trait Ontology
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stress trait( TO:0000164 )
leaf angle( TO:0000206 )
auxin content( TO:0002672 )
biotic stress trait( TO:0000179 )
jasmonic acid content( TO:0002668 )
diterpenoid phytoalexin content( TO:0002669 )
copper sensitivity( TO:0000021 )
blast disease( TO:0000074 )
fertility related trait( TO:0000420 )
glume opening( TO:0000474 )
potassium content( TO:0000609 )
salt tolerance( TO:0006001 )
jasmonic acid sensitivity( TO:0000172 )
auxin sensitivity( TO:0000163 )
nematode damage resistance( TO:0000384 )
flowering time( TO:0002616 )
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Plant Ontology
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flowering stage( PO:0007616 )
anther( PO:0009066 )
shoot system( PO:0009006 )
inflorescence( PO:0009049 )
plant callus( PO:0005052 )
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Related Strains
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Phenotype images
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Last updated
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Aug 24, 2026
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Update info.