Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol JAR1
Gene Symbol Synonym OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
Gene Name Synonym jasmonyl-L-isoleucine synthase 1, JASMONATE RESISTANT 1, GRETCHEN HAGEN 3.5
Allele osjar1, osjar1-1, osjar1-2, osjar1-3, osgh3-5, jar1, jar1-1
Chromosome No. 5
Explanation Q6I581.
Trait Class Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Tolerance and resistance - Disease resistance
Tolerance and resistance - Insect resistance
Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
Reproductive organ - Pollination, fertilization, fertility
cDNA Accession No. AK071721
MSU ID LOC_Os05g50890.1
RAP ID Os05g0586200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Wang L., Xu G., Li L., Ruan M., Bennion A., Wang G.L., Li R., Qu S.
Proc. Natl. Acad. Sci. U.S.A. 2023  120(13)  e2211102120
The OsBDR1-MPK3 module negatively regulates blast resistance by suppressing the jasmonate signaling and terpenoid biosynthesis pathway.
Wang X., Cheng R., Xu D., Huang R., Li H., Jin L., Wu Y., Tang J., Sun C., Peng D., Chu C., Guo X.
Nat Commun 2023  14(1)  3354
MG1 interacts with a protease inhibitor and confers resistance to rice root-knot nematode.
Hu B., Zhou Y., Zhou Z., Sun B., Zhou F., Yin C., Ma W., Chen H., Lin Y.
Plant Biotechnol. J. 2021   
Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.
Wang L., Cao S., Wang P., Lu K., Song Q., Zhao F.J., Chen Z.J.
Proc. Natl. Acad. Sci. U.S.A. 2021  118(13) 
DNA hypomethylation in tetraploid rice potentiates stress-responsive gene expression for salt tolerance.
Yu Y., Zhou Y.F., Feng Y.Z., He H., Lian J.P., Yang Y.W., Lei M.Q., Zhang Y.C., Chen Y.Q.
Plant Biotechnol. J. 2020  18(3)  679-690
Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.
Meng F., Yang C., Cao J., Chen H., Pang J., Zhao Q., Wang Z., Qing Fu Z., Liu J.
J Integr Plant Biol 2020   
A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.
Zhang H., Li L., He Y., Qin Q., Chen C., Wei Z., Tan X., Xie K., Zhang R., Hong G., Li J., Li J., Yan C., Yan F., Li Y., Chen J., Sun Z.
Proc. Natl. Acad. Sci. U.S.A. 2020  117(16)  9112-9121
Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.
Hazman M., Martin Sühnel, Sandra Schäfer, Zumsteg J., Agnès Lesot, Fréderic Beltran, Marquis V., Herrgott L., Miesch L., Riemann M., Heitz T.
Rice (N Y) 2019  12(1)  45
Characterization of Jasmonoyl-Isoleucine (JA-Ile) Hormonal Catabolic Pathways in Rice upon Wounding and Salt Stress.
Ye M., Glauser G., Lou Y., Erb M., Hu L.
Plant Cell 2019  31(3)  687-698
Molecular Dissection of Early Defense Signaling Underlying Volatile-Mediated Defense Regulation and Herbivore Resistance in Rice.
Kong W., Zhong H., Deng X., Gautam M., Gong Z., Zhang Y., Zhao G., Liu C., Li Y.
Plants (Basel) 2019  8(2) 
Evolutionary Analysis of <i>GH3</i> Genes in Six <i>Oryza</i> Species/Subspecies and Their Expression under Salinity Stress in <i>Oryza sativa</i> ssp. <i>japonica</i>.
Ke Y., Kang Y., Wu M., Liu H., Hui S., Zhang Q., Li X., Xiao J., Wang S.
Rice (N Y) 2019  12(1)  25
Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.
Chen Z., Chen T., Sathe A.P., He Y., Zhang X.B., Wu J.L.
Int J Mol Sci 2018  19(12) 
Identification of a Novel Semi-Dominant Spotted-Leaf Mutant with Enhanced Resistance to <i>Xanthomonas</i><i>oryzae</i> pv. <i>oryzae</i> in Rice.
Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018  9  1528
Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.
Ogawa S., Kawahara-Miki R., Miyamoto K., Yamane H., Nojiri H., Tsujii Y., Okada K.
Biochem. Biophys. Res. Commun. 2017  486(3)  796-803
OsMYC2 mediates numerous defence-related transcriptional changes via jasmonic acid signalling in rice.
Yang J., Yuan Z., Meng Q., Huang G., Périn C., Bureau C., Meunier A.C., Ingouff M., Bennett M.J., Liang W., Zhang D.
Front Plant Sci 2017  8  256
Dynamic Regulation of Auxin Response during Rice Development Revealed by Newly Established Hormone Biosensor Markers.
Tanabe K., Hojo Y., Shinya T., Galis I.
J Integr Plant Biol 2016   
Molecular evidence for biochemical diversification of phenolamide biosynthesis in rice plants.
Yang C., Li W., Cao J., Meng F., Yu Y., Huang J., Jiang L., Liu M., Zhang Z., Chen X., Miyamoto K., Yamane H., Zhang J., Chen S., Liu J.
Plant J. 2016   
Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.
You Q., Zhai K., Yang D., Yang W., Wu J., Liu J., Pan W., Wang J., Zhu X., Jian Y., Liu J., Zhang Y., Deng Y., Li Q., Lou Y., Xie Q., He Z.
Cell Host Microbe 2016  20(6)  758-769
An E3 Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum disease resistance.
Chen Y., Ma J., Anthony J Miller, Luo B., Wang M., Zhu Z., Pieter B F Ouwerkerk
Plant Cell Physiol. 2016  57(7)  1530-1543
OsCHX14 is Involved in the K+ Homeostasis in Rice (Oryza sativa) Flowers.
Xu Y., Zong W., Hou X., Yao J., Liu H., Li X., Zhao Y., Xiong L.
Plant J. 2015  83(5)  806-17
OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
Xiao Y., Chen Y., Charnikhova T., Mulder P.P., Heijmans J., Hoogenboom A., Agalou A., Michel C., Morel J.B., Dreni L., Kater M.M., Bouwmeester H., Wang M., Zhu Z., Ouwerkerk P.B.
Plant Mol. Biol. 2014  86(1-2)  19-33
OsJAR1 is required for JA-regulated floret opening and anther dehiscence in rice.
Zhang S., Wang S., Xu Y., Yu C., Shen C., Qian Q., Geisler M., Jiang D.A., Qi Y.
Plant Cell Environ. 2014   
The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
Svyatyna K., Jikumaru Y., Brendel R., Reichelt M., Mithöfer A., Takano M., Kamiya Y., Nick P., Riemann M.
Plant Cell Environ. 2014  37(4)  827-39
Light induces jasmonate-isoleucine conjugation via OsJAR1-dependent and -independent pathways in rice.
Shimizu T., Miyamoto K., Miyamoto K., Minami E., Nishizawa Y., Iino M., Nojiri H., Yamane H., Okada K.
Biosci. Biotechnol. Biochem. 2013  77(7)  1556-64
OsJAR1 Contributes Mainly to Biosynthesis of the Stress-Induced Jasmonoyl-Isoleucine Involved in Defense Responses in Rice.
Fukumoto K., Alamgir K.M., Yamashita Y., Mori I.C., Matsuura H., Galis I.
J Integr Plant Biol 2013  55(8)  775-84
Response of rice to insect elicitors and the role of OsJAR1 in wound and herbivory-induced JA-Ile accumulation.
Du H., Wu N., Fu J., Wang S., Li X., Xiao J., Xiong L.
J. Exp. Bot. 2012  63(18)  6467-80
A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice.
Wakuta S. , Suzuki E. , Saburi W. , Matsuura H. , Nabeta K. , Imai R. , Matsui H.
Biochem. Biophys. Res. Commun.  2011  409(4)  634-9
OsJAR1 and OsJAR2 are jasmonyl-l-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling.
Jain M., Kaur N., Akhilesh K Tyagi, Jitendra P Khurana
Funct. Integr. Genomics 2006  6(1)  36-46
The auxin-responsive GH3 gene family in rice (Oryza sativa).
TextPresso Search Search textpresso for JAR1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology defense response to nematode( GO:0002215 )
response to copper ion( GO:0046688 )
phytoalexin biosynthetic process( GO:0052315 )
jasmonic acid biosynthetic process( GO:0009695 )
defense response to fungus( GO:0050832 )
defense response( GO:0006952 )
jasmonate-amino synthetase activity( GO:0080123 )
vacuole( GO:0005773 )
chloroplast( GO:0009507 )
red, far-red light phototransduction( GO:0009585 )
systemic acquired resistance( GO:0009627 )
response to auxin stimulus( GO:0009733 )
response to jasmonic acid stimulus( GO:0009753 )
photomorphogenesis( GO:0009640 )
jasmonic acid metabolic process( GO:0009694 )
auxin mediated signaling pathway( GO:0009734 )
jasmonic acid and ethylene-dependent systemic resistance( GO:0009861 )
induced systemic resistance, jasmonic acid mediated signaling pathway( GO:0009864 )
regulation of stomatal movement( GO:0010119 )
response to ozone( GO:0010193 )
negative regulation of defense response( GO:0031348 )
adenylyltransferase activity( GO:0070566 )
jasmonic acid mediated signaling pathway( GO:0009867 )
anther dehiscence( GO:0009901 )
response to salt stress( GO:0009651 )
response to wounding( GO:0009611 )
Trait Ontology stress trait( TO:0000164 )
leaf angle( TO:0000206 )
auxin content( TO:0002672 )
biotic stress trait( TO:0000179 )
jasmonic acid content( TO:0002668 )
diterpenoid phytoalexin content( TO:0002669 )
copper sensitivity( TO:0000021 )
blast disease( TO:0000074 )
fertility related trait( TO:0000420 )
glume opening( TO:0000474 )
potassium content( TO:0000609 )
salt tolerance( TO:0006001 )
jasmonic acid sensitivity( TO:0000172 )
auxin sensitivity( TO:0000163 )
nematode damage resistance( TO:0000384 )
Plant Ontology flowering stage( PO:0007616 )
anther( PO:0009066 )
shoot system( PO:0009006 )
Related Strains
Phenotype images
Last updated
Oct 6, 2023