Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SP1
Gene Symbol Synonym sp, SP, OsNPF4.1, NPF4.1, OsSP1, BPB1, OsBPB1
CGSNL Gene Name SHORT PANICLE 1
Gene Name Synonym short panicle, SHORT PANICLE, short panicle1, NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 4.1, basal primary branch 1
Protein Name PEPTIDE TRANSPORTER FAMILY TRANSPORTER 1
Allele sp1-1, sp1-2, bpb1, bpb2, bpb2-1, bpb2-2, bpb2-3
Chromosome No. 11
Explanation peptide transporter (PTR) gene family. SP1 encodes a putative PTR family transporter. Proton oligopeptide transporter (POT). TO:0000993: cellulose content. GO:1901141: regulation of lignin biosynthetic process. GO:2001006: regulation of cellulose biosynthetic process. GO:2000904: regulation of starch metabolic process. TO:0000975: grain width.
Trait Class Vegetative organ - Culm
Vegetative organ - Root
Reproductive organ - Inflorescence
Reproductive organ - panicle
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Expression
Sequence/Locus
cDNA Accession No. AK100802
MSU ID LOC_Os11g12740.1
RAP ID Os11g0235200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM) 38.0
Link map Classical linkage map
References
Tang H., Fan J., Wang R., Zhu J., Xiang X., Dong J., Zhou L., Wang L.
G3 (Bethesda) 2023  13(7) 
Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.
Li F., Wang K., Zhang X., Han P., Liu Y., Zhang J., Peng T., Li J., Zhao Y., Sun H., Du Y.
Mol. Breed. 2023  43(5)  41
<i>BPB1</i> regulates rice (<i>Oryza sative</i> L.) panicle length and panicle branch development by promoting lignin and inhibiting cellulose accumulation.
Liu X., Deng X., Kong W., Sun T., Li Y.
Int J Mol Sci 2023  24(2) 
The Pyramiding of Elite Allelic Genes Related to grain number Increases grain number per Panicle Using the Recombinant Lines Derived from <i>Indica-japonica</i> Cross in Rice.
Yang X., Xia X., Zeng Y., Nong B., Zhang Z., Wu Y., Tian Q., Zeng W., Gao J., Zhou W., Liang H., Li D., Deng G.
BMC Plant Biol. 2020  20(1)  193
Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency.
Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019   
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
Liang W., Shang F., Lin Q., Lou C., Zhang J.
Gene 2014  537(1)  1-5
Tillering and panicle branching genes in rice.
Sophie Léran, Varala K., Jean-Christophe Boyer, Chiurazzi M., Crawford N., Françoise Daniel-Vedele, David L., Dickstein R., Fernandez E., Forde B., Gassmann W., Geiger D., Gojon A., Ji-Ming Gong, Barbara A Halkier, Jeanne M Harris, Hedrich R., Anis M Limami, Rentsch D., Seo M., Yi-Fang Tsay, Zhang M., Coruzzi G., Benoît Lacombe
Trends Plant Sci. 2014  19(1)  5-9
A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants.
Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013  16(2)  213-20
Genes offering the potential for designing yield-related traits in rice.
Li S,Qian Q,Fu Z,Zeng D,Meng X,Kyozuka J,Maekawa M,Zhu X,Zhang J,Li J,Wang Y
Plant J. 2009  58  592-605
Short panicle1 encodes a putative PTR family transporter and determines rice panicle size.
Murai, M. and M. Iizawa
Breeding Science 1994  44  247-255.
Effects of major genes controlling morphology of panicle in rice.
Ando, I., T. Yoshida and N. Kishimoto
RGN 1993  10  102-105.
Genetic analysis of some traits of paddy and upland rices using doubled haploids derived from the F1 plants of Kochihibiki x Sensho.
Iwata, N. and T. Omura
Jpn. J. Genet. 1984  59(3)  199-204.
Studies on the trisomics in rice plants (Oryza sativa L.). VI. An accomplishment of a trisomic series in japonica rice plants.
Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984    187-274.
Gene analysis and linkage map.
Iwata, N., T. Omura and H. Satoh
Japan. J. Breed. 1978  28(Suppl. 1)  170-171.
Linkage studies in rice. The sequence of genes at the eight and eleventh linkage groups.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1977  27(Suppl. 1)  250-251.
Linkage studies in rice.Linkage groups for 6 genes newly described.
Iwata, N. and T. Omura
Sci. Bull. Fac. Agr. Kyushu Univ. 1971  25(3.4)  137-153.
Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L).II. Linkage groups corresponding to the chromosomes 5, 6, 8, 9, 10 and 11.
Nagao, S. and M. Takahashi
J. Fac. Agr. Hokkaido Univ. 1963  53(1)  72-130.
Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).
DB Reference
Gramene ID GR:0060900
Ontologies
Gene Ontology regulation of abscisic acid biosynthetic process( GO:0010115 )
regulation of gibberellin biosynthetic process( GO:0010371 )
ethylene mediated signaling pathway( GO:0009873 )
brassinosteroid mediated signaling( GO:0009742 )
cytokinin mediated signaling( GO:0009736 )
gibberellic acid mediated signaling( GO:0009740 )
abscisic acid mediated signaling( GO:0009738 )
auxin mediated signaling pathway( GO:0009734 )
regulation of cell cycle( GO:0051726 )
sucrose metabolic process( GO:0005985 )
starch metabolic process( GO:0005982 )
cellulose biosynthetic process( GO:0030244 )
lignin biosynthetic process( GO:0009809 )
multicellular organismal development( GO:0007275 )
Trait Ontology panicle type( TO:0000089 )
panicle length( TO:0000040 )
grain number( TO:0002759 )
inflorescence branching( TO:0000050 )
filled grain number( TO:0000447 )
primary branch number( TO:0000547 )
secondary branch number( TO:0000557 )
lignin content( TO:0000731 )
lignin biosynthesis trait( TO:0000733 )
plant height( TO:0000207 )
tiller number( TO:0000346 )
root length( TO:0000227 )
root volume( TO:0000233 )
grain size( TO:0000397 )
grain shape( TO:0002730 )
grain length( TO:0000734 )
grain width( TO:0000402 )
grain thickness( TO:0000399 )
1000-seed weight( TO:0000382 )
germination rate( TO:0000430 )
Plant Ontology inflorescence( PO:0009049 )
Related Strains
F Lines 24
Backcross Fn Generation (T65) 1
Phenotype images
Click to full size image in new window
Photo from A. Yoshimura
Last updated
Feb 21, 2025


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