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Basic Information
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CGSNL Gene Symbol
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SP1
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Gene Symbol Synonym
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sp, SP, OsNPF4.1, NPF4.1, OsSP1, BPB1, OsBPB1
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CGSNL Gene Name
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SHORT PANICLE 1
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Gene Name Synonym
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short panicle, SHORT PANICLE, short panicle1, NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 4.1, basal primary branch 1
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Protein Name
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PEPTIDE TRANSPORTER FAMILY TRANSPORTER 1
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Allele
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sp1-1, sp1-2, bpb1, bpb2, bpb2-1, bpb2-2, bpb2-3
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Chromosome No.
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11
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Explanation
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peptide transporter (PTR) gene family. SP1 encodes a putative PTR family transporter. Proton oligopeptide transporter (POT). TO:0000993: cellulose content. GO:1901141: regulation of lignin biosynthetic process. GO:2001006: regulation of cellulose biosynthetic process. GO:2000904: regulation of starch metabolic process. TO:0000975: grain width.
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Trait Class
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Vegetative organ - Culm
Vegetative organ - Root
Reproductive organ - Inflorescence
Reproductive organ - panicle
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK100802
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MSU ID
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LOC_Os11g12740.1
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RAP ID
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Os11g0235200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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38.0
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Link map
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Classical linkage map
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References
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Tang H., Fan J., Wang R., Zhu J., Xiang X., Dong J., Zhou L., Wang L.
G3 (Bethesda) 2023 13(7)
Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.
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Li F., Wang K., Zhang X., Han P., Liu Y., Zhang J., Peng T., Li J., Zhao Y., Sun H., Du Y.
Mol. Breed. 2023 43(5) 41
<i>BPB1</i> regulates rice (<i>Oryza sative</i> L.) panicle length and panicle branch development by promoting lignin and inhibiting cellulose accumulation.
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Liu X., Deng X., Kong W., Sun T., Li Y.
Int J Mol Sci 2023 24(2)
The Pyramiding of Elite Allelic Genes Related to grain number Increases grain number per Panicle Using the Recombinant Lines Derived from <i>Indica-japonica</i> Cross in Rice.
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Yang X., Xia X., Zeng Y., Nong B., Zhang Z., Wu Y., Tian Q., Zeng W., Gao J., Zhou W., Liang H., Li D., Deng G.
BMC Plant Biol. 2020 20(1) 193
Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency.
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Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
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Liang W., Shang F., Lin Q., Lou C., Zhang J.
Gene 2014 537(1) 1-5
Tillering and panicle branching genes in rice.
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Sophie Léran, Varala K., Jean-Christophe Boyer, Chiurazzi M., Crawford N., Françoise Daniel-Vedele, David L., Dickstein R., Fernandez E., Forde B., Gassmann W., Geiger D., Gojon A., Ji-Ming Gong, Barbara A Halkier, Jeanne M Harris, Hedrich R., Anis M Limami, Rentsch D., Seo M., Yi-Fang Tsay, Zhang M., Coruzzi G., Benoît Lacombe
Trends Plant Sci. 2014 19(1) 5-9
A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants.
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Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013 16(2) 213-20
Genes offering the potential for designing yield-related traits in rice.
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Li S,Qian Q,Fu Z,Zeng D,Meng X,Kyozuka J,Maekawa M,Zhu X,Zhang J,Li J,Wang Y
Plant J. 2009 58 592-605
Short panicle1 encodes a putative PTR family transporter and determines rice panicle size.
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Murai, M. and M. Iizawa
Breeding Science 1994 44 247-255.
Effects of major genes controlling morphology of panicle in rice.
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Ando, I., T. Yoshida and N. Kishimoto
RGN 1993 10 102-105.
Genetic analysis of some traits of paddy and upland rices using doubled haploids derived from the F1 plants of Kochihibiki x Sensho.
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Iwata, N. and T. Omura
Jpn. J. Genet. 1984 59(3) 199-204.
Studies on the trisomics in rice plants (Oryza sativa L.). VI. An accomplishment of a trisomic series in japonica rice plants.
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Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984 187-274.
Gene analysis and linkage map.
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Iwata, N., T. Omura and H. Satoh
Japan. J. Breed. 1978 28(Suppl. 1) 170-171.
Linkage studies in rice. The sequence of genes at the eight and eleventh linkage groups.
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Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1977 27(Suppl. 1) 250-251.
Linkage studies in rice.Linkage groups for 6 genes newly described.
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Iwata, N. and T. Omura
Sci. Bull. Fac. Agr. Kyushu Univ. 1971 25(3.4) 137-153.
Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L).II. Linkage groups corresponding to the chromosomes 5, 6, 8, 9, 10 and 11.
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Nagao, S. and M. Takahashi
J. Fac. Agr. Hokkaido Univ. 1963 53(1) 72-130.
Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).
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DB Reference
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Gramene ID
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GR:0060900
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Ontologies
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Gene Ontology
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regulation of abscisic acid biosynthetic process( GO:0010115 )
regulation of gibberellin biosynthetic process( GO:0010371 )
ethylene mediated signaling pathway( GO:0009873 )
brassinosteroid mediated signaling( GO:0009742 )
cytokinin mediated signaling( GO:0009736 )
gibberellic acid mediated signaling( GO:0009740 )
abscisic acid mediated signaling( GO:0009738 )
auxin mediated signaling pathway( GO:0009734 )
regulation of cell cycle( GO:0051726 )
sucrose metabolic process( GO:0005985 )
starch metabolic process( GO:0005982 )
cellulose biosynthetic process( GO:0030244 )
lignin biosynthetic process( GO:0009809 )
multicellular organismal development( GO:0007275 )
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Trait Ontology
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panicle type( TO:0000089 )
panicle length( TO:0000040 )
grain number( TO:0002759 )
inflorescence branching( TO:0000050 )
filled grain number( TO:0000447 )
primary branch number( TO:0000547 )
secondary branch number( TO:0000557 )
lignin content( TO:0000731 )
lignin biosynthesis trait( TO:0000733 )
plant height( TO:0000207 )
tiller number( TO:0000346 )
root length( TO:0000227 )
root volume( TO:0000233 )
grain size( TO:0000397 )
grain shape( TO:0002730 )
grain length( TO:0000734 )
grain width( TO:0000402 )
grain thickness( TO:0000399 )
1000-seed weight( TO:0000382 )
germination rate( TO:0000430 )
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Plant Ontology
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inflorescence( PO:0009049 )
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Related Strains
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F Lines
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24
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Backcross Fn Generation (T65)
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1
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Phenotype images
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Click to full size image in new window
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Photo from
A. Yoshimura
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Last updated
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Feb 21, 2025
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