Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SP1
Gene Symbol Synonym sp, SP, OsNPF4.1, NPF4.1, OsSP1
CGSNL Gene Name SHORT PANICLE 1
Gene Name Synonym short panicle, SHORT PANICLE, short panicle1, NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 4.1
Protein Name PEPTIDE TRANSPORTER FAMILY TRANSPORTER 1
Allele sp1-1, sp1-2
Chromosome No. 11
Explanation peptide transporter (PTR) gene family. SP1 encodes a putative PTR family transporter. Proton oligopeptide transporter (POT).
Trait Class Reproductive organ - Inflorescence
Character as QTL - Yield and productivity
Expression
Sequence/Locus
cDNA Accession No. AK100802
MSU ID LOC_Os11g12740.1
RAP ID Os11g0235200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM) 38.0
Link map Classical linkage map
References
Yang X., Xia X., Zeng Y., Nong B., Zhang Z., Wu Y., Tian Q., Zeng W., Gao J., Zhou W., Liang H., Li D., Deng G.
BMC Plant Biol. 2020  20(1)  193
Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency.
Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019   
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
Sophie Léran, Varala K., Jean-Christophe Boyer, Chiurazzi M., Crawford N., Françoise Daniel-Vedele, David L., Dickstein R., Fernandez E., Forde B., Gassmann W., Geiger D., Gojon A., Ji-Ming Gong, Barbara A Halkier, Jeanne M Harris, Hedrich R., Anis M Limami, Rentsch D., Seo M., Yi-Fang Tsay, Zhang M., Coruzzi G., Benoît Lacombe
Trends Plant Sci. 2014  19(1)  5-9
A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants.
Liang W., Shang F., Lin Q., Lou C., Zhang J.
Gene 2014  537(1)  1-5
Tillering and panicle branching genes in rice.
Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013  16(2)  213-20
Genes offering the potential for designing yield-related traits in rice.
Li S,Qian Q,Fu Z,Zeng D,Meng X,Kyozuka J,Maekawa M,Zhu X,Zhang J,Li J,Wang Y
Plant J. 2009  58  592-605
Short panicle1 encodes a putative PTR family transporter and determines rice panicle size.
Murai, M. and M. Iizawa
Breeding Science 1994  44  247-255.
Effects of major genes controlling morphology of panicle in rice.
Ando, I., T. Yoshida and N. Kishimoto
RGN 1993  10  102-105.
Genetic analysis of some traits of paddy and upland rices using doubled haploids derived from the F1 plants of Kochihibiki x Sensho.
Iwata, N. and T. Omura
Jpn. J. Genet. 1984  59(3)  199-204.
Studies on the trisomics in rice plants (Oryza sativa L.). VI. An accomplishment of a trisomic series in japonica rice plants.
Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984    187-274.
Gene analysis and linkage map.
Iwata, N., T. Omura and H. Satoh
Japan. J. Breed. 1978  28(Suppl. 1)  170-171.
Linkage studies in rice. The sequence of genes at the eight and eleventh linkage groups.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1977  27(Suppl. 1)  250-251.
Linkage studies in rice.Linkage groups for 6 genes newly described.
Iwata, N. and T. Omura
Sci. Bull. Fac. Agr. Kyushu Univ. 1971  25(3.4)  137-153.
Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L).II. Linkage groups corresponding to the chromosomes 5, 6, 8, 9, 10 and 11.
Nagao, S. and M. Takahashi
J. Fac. Agr. Hokkaido Univ. 1963  53(1)  72-130.
Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).
TextPresso Search Search textpresso for SP1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060900
Ontologies
Gene Ontology multicellular organismal development( GO:0007275 )
Trait Ontology panicle type( TO:0000089 )
panicle length( TO:0000040 )
grain number( TO:0002759 )
inflorescence branching( TO:0000050 )
Plant Ontology inflorescence( PO:0009049 )
Related Strains
F Lines 24
Backcross Fn Generation (T65) 1
Phenotype images
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Photo from A. Yoshimura
Last updated
Aug 24, 2020

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