Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol SODB
Gene Symbol Synonym SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1
CGSNL Gene Name SUPEROXIDE DISMUTASE B
Gene Name Synonym Superoxide dismutase B, Fe-dependent superoxide dismutase, iron superoxide dismutase, iron-superoxide dismutase, Fe-dependent SOD 1.2, Fe-superoxide dismutase 2
Protein Name SUPEROXIDE DISMUTASE B
Allele
Chromosome No. 6
Explanation AY770495. AY770496 (promoter sequence), AY871310 (alternative spliced). OsFSD2 in Ge et al. 2020. OsFSD1 in Navarro et al. 2021. GO:0072593: reactive oxygen species metabolic process. GO:0120126: response to copper ion starvation.
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK062073
MSU ID LOC_Os06g05110.1
LOC_Os06g05110.3
RAP ID Os06g0143000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
-
Map
Locate(cM)
Link map Classical linkage map
References
Zu X., Luo L., Wang Z., Gong J., Yang C., Wang Y., Xu C., Qiao X., Deng X., Song X., Chen C., Tan B.C., Cao X.
Nat Commun 2023  14(1)  6789
A mitochondrial pentatricopeptide repeat protein enhances cold tolerance by modulating mitochondrial superoxide in rice.
Mei W., Chen W., Wang Y., Liu Z., Dong Y., Zhang G., Deng H., Liu X., Lu X., Wang F., Chen G., Tang W., Xiao Y.
Int J Mol Sci 2023  24(7) 
Exogenous Kinetin Modulates ROS Homeostasis to Affect heat tolerance in Rice Seedlings.
Lu X., Min W., Shi Y., Tian L., Li P., Ma T., Zhang Y., Luo C.
Front Plant Sci 2022  13  849553
Exogenous Melatonin Alleviates Alkaline Stress by Removing Reactive Oxygen Species and Promoting Antioxidant Defence in Rice Seedlings.
Zhang C., Li N., Hu Z., Liu H., Hu Y., Tan Y., Sun Q., Liu X., Xiao L., Wang W., Wang R.
Int J Mol Sci 2022  23(22) 
Mutation of <i>leaf senescence 1</i> Encoding a C2H2 Zinc Finger Protein Induces ROS Accumulation and Accelerates leaf senescence in Rice.
Gu S., Zhuang J., Zhang Z., Chen W., Xu H., Zhao M., Ma D.
Front Plant Sci 2022  13  1110724
Multi-omics approach reveals the contribution of <i>OsSEH1</i> to rice cold tolerance.
Luo C., Min W., Akhtar M., Lu X., Bai X., Zhang Y., Tian L., Li P.
Int J Mol Sci 2022  23(20) 
Melatonin Enhances Drought Tolerance in Rice Seedlings by Modulating Antioxidant Systems, Osmoregulation, and Corresponding Gene Expression.
Hu B., Zhou Y., Zhou Z., Sun B., Zhou F., Yin C., Ma W., Chen H., Lin Y.
Plant Biotechnol. J. 2021   
Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.
Liu Q., Dong G.R., Ma Y.Q., Zhao S.M., Liu X., Li X.K., Li Y.J., Hou B.K.
Front Plant Sci 2021  12  790195
Rice Glycosyltransferase Gene <i>UGT85E1</i> Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.
He Y., Zhang X., Shi Y., Xu X., Li L., Wu J.L.
Rice (N Y) 2021  14(1)  53
PREMATURE SENESCENCE LEAF 50 Promotes Heat Stress Tolerance in Rice (Oryza sativa L.).
Navarro B.B., Del Frari BK., Dias PVDC., Lemainski L.E., Mario R.B., Ponte L.R., Goergen A., Tarouco C.P., Neves V.M., Dressler V.L., Fett J.P., Brunetto G., Sperotto R.A., Nicoloso F.T., Ricachenevsky F.K.
Plant Physiol. Biochem. 2021  158  113-124
The copper economy response is partially conserved in rice (Oryza sativa L.).
Ge Q., Zhang Y., Xu Y., Bai M., Luo W., Wang B., Niu Y., Zhao Y., Li S., Weng Y., Wang Z., Qian Q., Chong K.
New Phytol. 2020  225(6)  2453-2467
cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.
Xu Y., Wang R., Wang Y., Zhang L., Yao S.
Plant Cell Environ. 2020  43(4)  992-1007
A point mutation in ltt1 enhances cold tolerance at the booting stage in rice.
Fang G., Yang S., Ruan B., Liu C., Zhang A., Jiang H., Ding S., Tian B., Zhang Y., Jahan N., Zhu L., Zhang G., Dong G., Zhang Q., Zeng D., Guo L., Gao Z., Qian Q.
Rice (N Y) 2020  13(1)  49
Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice.
Zhang Q., Shen L., Wang Z., Hu G., Ren D., Hu J., Zhu L., Gao Z., Zhang G., Guo L., Zeng D., Qian Q.
Int J Mol Sci 2019  20(18) 
OsCAF1, a CRM Domain Containing Protein, Influences Chloroplast Development.
Atul Prakash Sathe, Su X., Chen Z., Chen T., Wei X., Tang S., Xiao-Bo Zhang, Jian-Li Wu
Rice (N Y) 2019  12(1)  68
Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.
Ning X., Sun Y., Wang C., Zhang W., Sun M., Hu H., Liu J., Yang L.
Front Plant Sci 2018  9  111
A Rice CPYC-type Glutaredoxin <i>OsGRX20</i> in Protection against Bacterial Blight, Methyl Viologen and Salt Stresses.
Xiong H., Yu J., Miao J., Li J., Zhang H., Wang X., Liu P., Zhao Y., Jiang C., Yin Z., Li Y., Guo Y., Fu B., Wang W., Li Z., Ali J., Li Z.
Plant Physiol. 2018  178(1)  451-467
Natural Variation in <i>OsLG3</i> Increases drought tolerance in Rice by Inducing ROS Scavenging.
Leng Y., Yang Y., Ren D., Huang L., Dai L., Wang Y., Chen L., Tu Z., Gao Y., Li X., Zhu L., Hu J., Zhang G., Gao Z., Guo L., Kong Z., Lin Y., Qian Q., Zeng D.
Plant Physiol. 2017   
A rice pectate lyase-LIKE gene is required for plant growth and leaf senescence.
Ma Y., Yang C., He Y., Tian Z., Li J.
J. Exp. Bot. 2017  68(17)  4885-4898
Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.
Andrés-Bordería A., Andrés F., Garcia-Molina A., Perea-García A., Domingo C., Puig S., Peñarrubia L.
Plant Mol. Biol. 2017   
Copper and ectopic expression of the Arabidopsis transport protein COPT1 alter iron homeostasis in rice (Oryza sativa L.).
Wang S., Lei C., Wang J., Ma J., Tang S., Wang C., Zhao K., Tian P., Zhang H., Qi C., Cheng Z., Zhang X., Guo X., Liu L., Wu C., Wan J.
J. Exp. Bot. 2017  68(5)  899-913
SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice.
Ruan S.L., Ma H.S., Wang S.H., Fu Y.P., Xin Y., Liu W.Z., Wang F., Tong J.X., Wang S.Z., Chen H.Z.
BMC Plant Biology 2011  11  -
Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed
Wang,F., Wang,H., Liu,B. and Wang,J.
Plant Cell Rep. 2006  24(12)  734-742
Cloning and characterization of a novel splicing isoform of the iron-superoxide dismutase gene in rice (Oryza sativa L.).
Kaminaka,H., Morita,S., Tokumoto,M., Yokoyama,H., Masumura,T. and Tanaka,K.
Biosci. Biotechnol. Biochem. 1999  63(2)  302-308
Molecular cloning and characterization of a cDNA for an iron-superoxide dismutase in rice (Oryza sativa L.).
TextPresso Search Search textpresso for SODB ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to cytokinin stimulus( GO:0009735 )
response to hormone stimulus( GO:0009725 )
response to heat( GO:0009408 )
metal ion binding( GO:0046872 )
superoxide dismutase activity( GO:0004784 )
superoxide metabolic process( GO:0006801 )
response to copper ion( GO:0046688 )
response to water deprivation( GO:0009414 )
chloroplast( GO:0009507 )
response to cold( GO:0009409 )
Trait Ontology copper sensitivity( TO:0000021 )
drought tolerance( TO:0000276 )
cold tolerance( TO:0000303 )
hydrogen peroxide content( TO:0000605 )
heat tolerance( TO:0000259 )
plant growth hormone sensitivity( TO:0000401 )
cytokinin sensitivity( TO:0000167 )
Plant Ontology -
Related Strains
-
Phenotype images
-
Last updated
Dec 21, 2023


/rice/oryzabase