Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol SODB
Gene Symbol Synonym SodB, Fe-SOD, Fe- SOD, OsFe-SOD, OsFe-SODa, OsFe-SODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1
CGSNL Gene Name SUPEROXIDE DISMUTASE B
Gene Name Synonym Superoxide dismutase B, Fe-dependent superoxide dismutase, iron superoxide dismutase, iron-superoxide dismutase, Fe-dependent SOD 1.2, Fe-superoxide dismutase 2
Protein Name SUPEROXIDE DISMUTASE B
Allele
Chromosome No. 6
Explanation AY770495. AY770496 (promoter sequence), AY871310 (alternative spliced). OsFSD2 in Ge et al. 2020. OsFSD1 in Navarro et al. 2021. GO:0072593: reactive oxygen species metabolic process. GO:0120126: response to copper ion starvation.
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK062073
MSU ID LOC_Os06g05110.1
LOC_Os06g05110.3
RAP ID Os06g0143000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
-
Map
Locate(cM)
Link map Classical linkage map
References
Navarro B.B., Del Frari BK., Dias PVDC., Lemainski L.E., Mario R.B., Ponte L.R., Goergen A., Tarouco C.P., Neves V.M., Dressler V.L., Fett J.P., Brunetto G., Sperotto R.A., Nicoloso F.T., Ricachenevsky F.K.
Plant Physiol. Biochem. 2021  158  113-124
The copper economy response is partially conserved in rice (Oryza sativa L.).
He Y., Zhang X., Shi Y., Xu X., Li L., Wu J.L.
Rice (N Y) 2021  14(1)  53
PREMATURE SENESCENCE LEAF 50 Promotes Heat Stress Tolerance in Rice (Oryza sativa L.).
Hu B., Zhou Y., Zhou Z., Sun B., Zhou F., Yin C., Ma W., Chen H., Lin Y.
Plant Biotechnol. J. 2021   
Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.
Fang G., Yang S., Ruan B., Liu C., Zhang A., Jiang H., Ding S., Tian B., Zhang Y., Jahan N., Zhu L., Zhang G., Dong G., Zhang Q., Zeng D., Guo L., Gao Z., Qian Q.
Rice (N Y) 2020  13(1)  49
Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice.
Ge Q., Zhang Y., Xu Y., Bai M., Luo W., Wang B., Niu Y., Zhao Y., Li S., Weng Y., Wang Z., Qian Q., Chong K.
New Phytol. 2020  225(6)  2453-2467
cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.
Xu Y., Wang R., Wang Y., Zhang L., Yao S.
Plant Cell Environ. 2020  43(4)  992-1007
A point mutation in ltt1 enhances cold tolerance at the booting stage in rice.
Zhang Q., Shen L., Wang Z., Hu G., Ren D., Hu J., Zhu L., Gao Z., Zhang G., Guo L., Zeng D., Qian Q.
Int J Mol Sci 2019  20(18) 
OsCAF1, a CRM Domain Containing Protein, Influences Chloroplast Development.
Atul Prakash Sathe, Su X., Chen Z., Chen T., Wei X., Tang S., Xiao-Bo Zhang, Jian-Li Wu
Rice (N Y) 2019  12(1)  68
Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.
Xiong H., Yu J., Miao J., Li J., Zhang H., Wang X., Liu P., Zhao Y., Jiang C., Yin Z., Li Y., Guo Y., Fu B., Wang W., Li Z., Ali J., Li Z.
Plant Physiol. 2018  178(1)  451-467
Natural Variation in <i>OsLG3</i> Increases drought tolerance in Rice by Inducing ROS Scavenging.
Ning X., Sun Y., Wang C., Zhang W., Sun M., Hu H., Liu J., Yang L.
Front Plant Sci 2018  9  111
A Rice CPYC-type Glutaredoxin <i>OsGRX20</i> in Protection against Bacterial Blight, Methyl Viologen and Salt Stresses.
Wang S., Lei C., Wang J., Ma J., Tang S., Wang C., Zhao K., Tian P., Zhang H., Qi C., Cheng Z., Zhang X., Guo X., Liu L., Wu C., Wan J.
J. Exp. Bot. 2017  68(5)  899-913
SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice.
Ma Y., Yang C., He Y., Tian Z., Li J.
J. Exp. Bot. 2017  68(17)  4885-4898
Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.
Andrés-Bordería A., Andrés F., Garcia-Molina A., Perea-García A., Domingo C., Puig S., Peñarrubia L.
Plant Mol. Biol. 2017   
Copper and ectopic expression of the Arabidopsis transport protein COPT1 alter iron homeostasis in rice (Oryza sativa L.).
Leng Y., Yang Y., Ren D., Huang L., Dai L., Wang Y., Chen L., Tu Z., Gao Y., Li X., Zhu L., Hu J., Zhang G., Gao Z., Guo L., Kong Z., Lin Y., Qian Q., Zeng D.
Plant Physiol. 2017   
A rice pectate lyase-LIKE gene is required for plant growth and leaf senescence.
Ruan S.L., Ma H.S., Wang S.H., Fu Y.P., Xin Y., Liu W.Z., Wang F., Tong J.X., Wang S.Z., Chen H.Z.
BMC Plant Biology 2011  11  -
Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed
Wang,F., Wang,H., Liu,B. and Wang,J.
Plant Cell Rep. 2006  24(12)  734-742
Cloning and characterization of a novel splicing isoform of the iron-superoxide dismutase gene in rice (Oryza sativa L.).
Kaminaka,H., Morita,S., Tokumoto,M., Yokoyama,H., Masumura,T. and Tanaka,K.
Biosci. Biotechnol. Biochem. 1999  63(2)  302-308
Molecular cloning and characterization of a cDNA for an iron-superoxide dismutase in rice (Oryza sativa L.).
TextPresso Search Search textpresso for SODB ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to heat( GO:0009408 )
metal ion binding( GO:0046872 )
superoxide dismutase activity( GO:0004784 )
superoxide metabolic process( GO:0006801 )
response to copper ion( GO:0046688 )
chloroplast( GO:0009507 )
response to cold( GO:0009409 )
Trait Ontology copper sensitivity( TO:0000021 )
cold tolerance( TO:0000303 )
hydrogen peroxide content( TO:0000605 )
heat tolerance( TO:0000259 )
Plant Ontology -
Related Strains
-
Phenotype images
-
Last updated
Oct 18, 2021


/rice/oryzabase