Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol ADH1
Gene Symbol Synonym Adh1, Adh1/2, adh1/adh2, OsADH1
Gene Name Synonym Alcohol dehydrogenase1, Alcohol dehydrogenase 1, Alcohol dehydrogenase-1, reduced adh activity, Alcohol dehydrogenase I
Allele Adh1-0, Adh1-1, Adh1-2, Adh1-3, rad
Chromosome No. 11
Explanation Dimer. P & C(ST-H). EC= Q75ZX4(indica). Q2R8Z5(japonica). X16296. AF148568-AF148598 (O.sativa and other wild rice species). AY749209-AY749246 (O.sativa and other wild rice species). D10412. FJ810879-FJ810918 (Oryza glaberrima, Oryza barthii, Oryza nivara). AB469048-AB469065 (O.sativa and other wild rice species). AY169473-AY169482 (wild rice species). DQ223326-DQ223334, DQ223352-DQ223399, DQ223404-DQ223408, DQ911245, DQ911246 (wild rice species). EF069438-EF069504 (O.sativa and other wild rice species). FJ266019-FJ266028 (indica and other wild rice species). GQ203296-GQ203303 (wild rice species). JQ414289-JQ414355 (wild rice species). D15646, D15540. BGIOSGA034312.
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK069330
MSU ID LOC_Os11g10480.1
RAP ID Os11g0210300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Locate(cM) 37.0
Link map Classical linkage map
Chen Z., Wang Y., Huang R., Zhang Z., Huang J., Yu F., Lin Y., Guo Y., Liang K., Zhou Y., Chen F.
BMC Plant Biol. 2022  22(1)  137
Integration of transcriptomic and proteomic analyses reveals several levels of metabolic regulation in the excess starch and early senescent leaf mutant LSES1 in rice.
Shin N.H., Lee O.N., Han J.H., Song K., Koh H.J., Yoo S.C., Chin J.H.
Plants (Basel) 2021  10(8) 
The Effect of Water Level in Rice Cropping System on Phosphorus Uptake Activity of <i>Pup1</i> in a <i>Pup1</i>+<i>Sub1</i> Breeding Line.
Lin C.C., Chao Y.T., Chen W.C., Ho H.Y., Chou M.Y., Li Y.R., Wu Y.L., Yang H.A., Hsieh H., Lin C.S., Wu F.H., Chou S.J., Jen H.C., Huang Y.H., Irene D., Wu W.J., Wu J.L., Gibbs D.J., Ho M.C., Shih M.C.
Proc. Natl. Acad. Sci. U.S.A. 2019  116(8)  3300-3309
Regulatory cascade involving transcriptional and N-end rule pathways in rice under submergence.
Hwang S.T., Choi D.
Plant Cell Rep. 2016   
A novel rice protein family of OsHIGDs may be involved in early signalling of hypoxia-promoted stem growth in deepwater rice.
Ai,B., Wang,Z.S. and Ge,S.
Evolution 2012  66(10)  3302-3310
Genome size is not correlated with effective population size in the oryza species
Li,Z.M., Zheng,X.M. and Ge,S.
Theor. Appl. Genet. 2011  123(1)  21-31
Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences
Takahashi H., Saika H., Matsumura H., Nagamura Y., Tsutsumi N., Nishizawa N.K., Nakazono M.
Ann. Bot. 2011  108(2)  253-61
Cell division and cell elongation in the coleoptile of rice alcohol dehydrogenase 1-deficient mutant are reduced under complete submergence.
Ammiraju J.S.S., Fan C., Yu Y., Song X., Cranston K.A., Pontaroli A.C., Lu F., Sanyal A., Jiang N., Rambo T., Currie J., Collura K., Talag J., Bennetzen J.L., Chen M., Jackson S., Wing R.A.
Plant Journal 2010  63(3)  430-442
Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza.
Ammiraju,J.S., Lu,F., Sanyal,A., Yu,Y., Song,X., Jiang,N., Pontaroli,A.C., Rambo,T., Currie,J., Collura,K., Talag,J., Fan,C., Goicoechea,J.L., Zuccolo,A., Chen,J., Bennetzen,J.L., Chen,M., Jackson,S. and Wing,R.A.
Plant Cell 2008  20(12)  3191-3209
Dynamic Evolution of Oryza Genomes Is Revealed by Comparative Genomic Analysis of a Genus-Wide Vertical Data Set
Wu,J., Mizuno,H., Sasaki,T. and Matsumoto,T.
Rice 1, 119-126 REMARK Publication_Status: Available-Online 2008   
Comparative Analysis of Rice Genome Sequence to Understand the Molecular Basis of Genome Evolution
Zhu,Q., Zheng,X., Luo,J., Gaut,B.S. and Ge,S.
Mol. Biol. Evol. 2007  24(3)  875-888
Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice
Zhang,L.B. and Ge,S.
Mol. Biol. Evol. 2007  24(3)  769-783
Multilocus analysis of nucleotide variation and speciation in Oryza officinalis and its close relatives
Xu,K., Xu,X., Fukao,T., Canlas,P., Maghirang-Rodriguez,R., Heuer,S., Ismail,A.M., Bailey-Serres,J., Ronald,P.C. and Mackill,D.J.
Nature 2006  442(7103)  705-708
Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
Tsuji H, Saika H, Tsutsumi N, Hirai A, Nakazono M.
Plant Cell Physiol. 2006  47(7)  995-1003
Dynamic and reversible changes in histone H3-Lys4 methylation and H3 acetylation occurring at submergence-inducible genes in rice.
Yoshida,K. and Miyashita,N.T.
Theor. Appl. Genet. 2005  111(6)  1215-1228
Nucleotide polymorphism in the Adh2 region of the wild rice Oryza rufipogon.
Zhu,Q. and Ge,S.
New Phytol. 2005  167(1)  249-265
Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes.
Yoshida, K., N.T. Miyashita and T. Ishii
Theor. Appl. Genet. 2004  109 (7)  1406-1416
Nucleotide polymorphism in the Adh1 locus region of the wild rice Oryza rufipogon.
Bao,Y. and Ge,S.
Plant Syst. Evol. 2004  249(1-2)  55-66
Origin and phylogeny of Oryza species with the CD genome based on multiple-gene sequence data
Ilic,K., SanMiguel,P.J. and Bennetzen,J.L.
Proc. Natl. Acad. Sci. U.S.A. 2003  100(21)  12265-12270
A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes.
Sauter,M., Rzewuski,G., Marwedel,T. and Lorbiecke,R.
J. Exp. Bot. 2002  53(379)  2325-2331
The novel ethylene-regulated gene OsUsp1 from rice encodes a member of a plant protein family related to prokaryotic universal stress proteins.
Tarchini,R., Biddle,P., Wineland,R., Tingey,S. and Rafalski,A.
Plant Cell 2000  12(3)  381-391
The complete sequence of 340 kb of DNA around the rice Adh1-adh2 region reveals interrupted colinearity with maize chromosome 4.
Ge,S., Sang,T., Lu,B.R. and Hong,D.Y.
Proc. Natl. Acad. Sci. U.S.A. 1999  96(25)  14400-14405
Phylogeny of rice genomes with emphasis on origins of allotetraploid species.
Singh, K., B. de los Reyes, D.S. Brar and G.S. Khush
RGN 1995  12  211-212.
Arm location of Adh-1 and Sdh-1 isozymes using secondary trisomics.
Umeda,M., Hara,C., Matsubayashi,Y., Li,H.H., Liu,Q., Tadokoro,F., Aotsuka,S. and Uchimiya,H.
Plant Mol. Biol. 1994  25(3)  469-478
Expressed sequence tags from cultured cells of rice (Oryza sativa L.) under stressed conditions: analysis of transcripts of genes engaged in ATP-generating pathways.
Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994  138  1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994  6(4)  615-624
Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
Abenes, M.L.P., R.E. Tabien, S.R. McCouch, R. Ikeda, P. Ronald, G.S. Khush and N. Huang
Euphytica 1994  76  81-87.
Orientation and integration of the classical and molecular genetic maps of chromosome 11 in rice.
Uchimiya,H., Kidou,S., Shimazaki,T., Aotsuka,S., Takamatsu,S., Nishi,R., Hashimoto,H., Matsubayashi,Y., Kidou,N., Umeda,M. and Kato,A.
Plant J. 1992  2(6)  1005-1009
Random sequencing og cDNA librariesreveals a variety of expressed genes in cultured cells of rice (Oryza sativa L.)
Ishikawa, R., H. Morishima and T. Kinoshita
Rice Genetics. II. IRRI, Manila, Philippines. 1991    127-136.
Linkage analysis and application of isozyme genes in rice.
Ranjhan, S., J.C. Litts, M.R. Foolad and R.L. Rodriguez
Theor. Appl. Genet. 1991  82  481-488.
Chromosomal localization and genomic organization of alpha-amylase genes in rice (Oryza sativa L.).
Brar, D.S., B.G. de los Reyes, O. Panaud, A. Sanchez and G.S. Khush
Rice Genetics. II. IRRI, Manila, Philippines. 1991    137-145.
Genetic mapping in rice using isozyme and RFLP markers.
Ishikawa, R., H. Morishima, T. Kinoshita, T. Harada, M. Niizeki and K. Saito
Japan. J. Breed. 1991  41(2)  265-272.
Linkage analysis of nine isozyme genes on the conventional linkage map in rice.
Sanchez, A.C., G.S. Khush and D.S. Brar
RGN 1990  7  110-111.
Linkage relations between Adh-1 and two morphological markers.
Xie,Y. and Wu,R.
Plant Mol. Biol. 1989  13(1)  53-68
Rice alcohol dehydrogenase genes: anaerobic induction, organ specific expression and characterization of cDNA clones.
Ishikawa, R., H. Morishima, K. Mori and T. Kinoshita
J. Fac. Agr. Hokkaido Univ. 1989  64(1)  85-98.
Choromosomal analysis of isozyme loci and the allelic expression at cellular level in rice.- Genetical studies on rice plant, XCVII -.
Ishikawa, R. and H. Morishima
RGN 1989  6  109-110.
Linkage analysis for four isozyme loci, Adh-1, Acp-1, Pox-2 and Pgd-2.
Ranjhan, S., J.C. Glaszmann, D.A. Ramirez and G.S. Khush
Theor. Appl. Genet. 1988  75  541-545.
Choromosomal localization of four isozyme loci by trisomic analysis in rice (Oryza sativa L.).
Ranjhan, S., J.C. Glaszmann and G.S. Khush
RGN 1986  3  56-58.
Localization of Pgi-1, Sdh-1, Est-9 and Adh-1 on rice chromosomes by trisomic analysis.
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DB Reference
Gramene ID GR:0060011
Gene Ontology response to flooding( GO:0009413 )
alcohol dehydrogenase (NAD) activity( GO:0004022 )
cytoplasm( GO:0005737 )
alcohol dehydrogenase (acceptor) activity( GO:0018468 )
zinc ion binding( GO:0008270 )
oxidation reduction( GO:0055114 )
Trait Ontology submergence tolerance( TO:0000524 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Aug 25, 2022