Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol D53
Gene Symbol Synonym D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53
CGSNL Gene Name DWARF KYUSHU 3
Gene Name Synonym Dwarf Kyushu3, Dwarf Kyushu 3, Dwarf Kyushu-3, dwarf-53, DWARF 53, DWARF53, SUPPRESSOR OF MAX2-LIKE6/7/8
Protein Name SUBSTRATE OF SCF-D3 UBIQUITINATION COMPLEX
Allele d53, d53-1D
Chromosome No. 11
Explanation Q2RBP2. Dominant dwarf gene with many tillers. a repressor of strigolactone signalling. a substrate of the SCFD3 ubiquitination complex. GO:1902347: response to strigolactone. GO:2000280: regulation of root development.
Trait Class Vegetative organ - Culm
Vegetative organ - Root
Expression
Sequence/Locus
cDNA Accession No. AK240842
MSU ID LOC_Os11g01330.1
RAP ID Os11g0104300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Feng M., Luo W., Luo S., Miao R., Gu M., Li S., Xing X., Zhang J., Qian J., Liu X., Zhou C., Sun Q., Luo T., Chen N., Ren Y., Cheng Z., Lei C., Zhao Z., Zhu S., Wang X., Guo X., Lin Q., Wan J.
Plant Biotechnol. J. 2025   
Strigolactones Regulate Sugar Allocation to Control Rice Tillering and Root Development via the OsSPL14-OsSHR1-OsSWEET16 Pathway.
Mo T., Wang T., Sun Y., Kumar A., Mkumbwa H., Fang J., Zhao J., Yuan S., Li Z., Li X.
Plant Commun 2024    101073
The chloroplast pentatricopeptide repeat protein RCN22 regulates tiller number in rice by affecting sugar levels via the tb1-RCN22-RbcL module.
Zheng Q., Zhou Z., Li X., Lan Y., Huang R., Zhang S., Li H.
Int J Mol Sci 2024  25(19) 
<i>Heading date 3a</i> Stimulates Tiller Bud Outgrowth in <i>Oryza sativa</i> L. through Strigolactone Signaling Pathway.
Wang J., Wan R., Nie H., Xue S., Fang Z.
The Crop Journal 2022  10  397-406
OsNPF5.16, a nitrate transporter gene with natural variation, is essential for rice growth and yield
Fang Z., Ji Y., Hu J., Guo R., Sun S., Wang X.
Mol Plant 2020  13(4)  586-597
Strigolactones and Brassinosteroids Antagonistically Regulate the Stability of the D53-OsBZR1 Complex to Determine FC1 Expression in Rice Tillering.
Zheng J., Hong K., Zeng L., Wang L., Kang S., Qu M., Dai J., Zou L., Zhu L., Tang Z., Meng X., Wang B., Hu J., Zeng D., Zhao Y., Cui P., Wang Q., Qian Q., Wang Y., Li J., Xiong G.
Plant Cell 2020  32(9)  2780-2805
Karrikin Signaling Acts Parallel to and Additively with Strigolactone Signaling to Regulate Rice Mesocotyl Elongation in Darkness.
Wang F., Han T., Song Q., Ye W., Song X., Chu J., Li J., Chen Z.J.
Plant Cell 2020  32(10)  3124-3138
The Rice Circadian Clock Regulates Tiller Growth and Panicle Development Through Strigolactone Signaling and Sugar Sensing.
Wang J., Wu B., Lu K., Wei Q., Qian J., Chen Y., Fang Z.
Plant Physiol. 2019  180(2)  1031-1045
The Amino Acid Permease 5 (OsAAP5) Regulates tiller number and grain yield in Rice.
Duan J., Yu H., Yuan K., Liao Z., Meng X., Jing Y., Liu G., Chu J., Li J.
Proc. Natl. Acad. Sci. U.S.A. 2019  116(28)  14319-14324
Strigolactone promotes cytokinin degradation through transcriptional activation of <i>CYTOKININ OXIDASE/DEHYDROGENASE 9</i> in rice.
Shabek N., Ticchiarelli F., Mao H., Hinds T.R., Leyser O., Zheng N.
Nature 2018  563(7733)  652-656
Structural plasticity of D3-D14 ubiquitin ligase in strigolactone signalling.
Ma H., Duan J., Ke J., He Y., Gu X., Xu T.H., Yu H., Wang Y., Brunzelle J.S., Jiang Y., Rothbart S.B., Xu H.E., Li J., Melcher K.
Sci Adv 2017  3(6)  e1601217
A D53 repression motif induces oligomerization of TOPLESS corepressors and promotes assembly of a corepressor-nucleosome complex.
Wang Y.P., Tang S.Q., Chen H.Z., Wu Z.F., Zhang H., Duan E.C., Shi Q.H., Wu Z.M.
Plant Biol (Stuttg) 2017   
Identification and molecular mapping of indica high-tillering dwarf mutant htd4, a mild phenotype allelic mutant of D14 in rice (Oryza sativa L.).
Song X., Lu Z., Yu H., Shao G., Xiong J., Meng X., Jing Y., Liu G., Xiong G., Duan J., Yao X.F., Liu C.M., Li H., Wang Y., Li J.
Cell Res. 2017  27(9)  1128-1141
IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice.
Smith S.M.
Nature 2013  504(7480)  384-5
Plant biology: Witchcraft and destruction.
Zhou F.a b, Lin Q.b, Zhu L.a, Ren Y.b, Zhou K.a, Shabek N.c d, Wu F.b, Mao H.c d, Dong W.b, Gan L.b, Ma W.b, Gao H.a, Chen J.b, Yang C.a, Wang D.b, Tan J.b, Zhang X.b, Guo X.b, Wang J.b, Jiang L.a, Liu X.a, Chen W.e, Chu J.e, Yan C.f, Ueno K.f, Ito S.f, Asami T.b, Cheng Z.b, Wang J.b, Lei C.b, Zhai H.b, Wu C.b, Wang H.b, Zheng N.c d, Wan J.a b
Nature 2013  504  406-410
D14-SCF D3 -dependent degradation of D53 regulates strigolactone signalling
Jiang L., Liu X., Xiong G., Liu H., Chen F., Wang L., Meng X., Liu G., Yu H., Yuan Y., Yi W., Zhao L., Ma H., He Y., Wu Z., Melcher K., Qian Q., H.EricXu, Wang Y., Li J.
Nature 2013  504  401-405
DWARF 53 acts as a repressor of strigolactone signalling in rice
Wan, Jianmin
Euphytica 2008  160  379
Genetic analysis of a novel dominant rice dwarf mutant 986083D.
Iwata, N. and T. Omura
Jpn. J. Genet. 1984  59(3)  199-204.
Studies on the trisomics in rice plants (Oryza sativa L.). VI. An accomplishment of a trisomic series in japonica rice plants.
Iwata, N., T. Omura and H. Satoh
Japan. J. Breed. 1978  28(Suppl. 1)  170-171.
Linkage studies in rice. The sequence of genes at the eight and eleventh linkage groups.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1977  27(Suppl. 1)  250-251.
Linkage studies in rice.Linkage groups for 6 genes newly described.
DB Reference
Gramene ID GR:0060218
Ontologies
Gene Ontology nucleus( GO:0005634 )
brassinosteroid mediated signaling( GO:0009742 )
response to brassinosteroid stimulus( GO:0009741 )
multicellular organismal development( GO:0007275 )
hormone-mediated signaling( GO:0009755 )
Trait Ontology leaf color( TO:0000326 )
leaf length( TO:0000135 )
tiller number( TO:0000346 )
shoot anatomy and morphology trait( TO:0000077 )
mesocotyl length( TO:0000544 )
tillering ability( TO:0000329 )
panicle type( TO:0000089 )
plant height( TO:0000207 )
stem length( TO:0000576 )
plant growth hormone sensitivity( TO:0000401 )
root length( TO:0000227 )
crown root number( TO:0002685 )
Plant Ontology vascular leaf( PO:0009025 )
stem( PO:0009047 )
inflorescence( PO:0009049 )
leaf( PO:0025034 )
Related Strains
Stocks for Genes 1
F Lines 2
Phenotype images
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Last updated
Jan 8, 2026

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