Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol XA4
Gene Symbol Synonym Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
CGSNL Gene Name XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 4
Gene Name Synonym Xanthomonas oryzae pv. oryzae resistance 4, Xanthomonas campestris pv. oryzae resistance-4, Xanthomonas oryzae pv. oryzae resistance-4
Protein Name
Allele
Chromosome No. 11
Explanation Resistant to the Philippine isolate Pxo25. [368]. a cell wall-associated kinase. KU761305 (Xa4 in rice line IRBB4), KU761306 (xa4 in rice variety IR24), KU761307 (Xa4 in rice variety IR64), KU761308 (Xa4 in rice variety Teqing), KU761309 (xa4 in rice variety Minghui 63), KU761310 (xa4 in rice variety Zhenshan 97), KU761311 (xa4 in rice variety Mudanjinag 8), KU761312 (xa4 in rice variety Zhonghua 11), and KU761313 (xa4 in rice variety Nipponbare). GO:2001008: positive regulation of cellulose biosynthetic process.
Trait Class Vegetative organ - Culm
Tolerance and resistance - Disease resistance
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID -
RAP ID -
Links -
INSD Accession List
(Test version)
-
Map
Locate(cM)
Link map Classical linkage map
References
Hu K., Cao J., Zhang J., Xia F., Ke Y., Zhang H., Xie W., Liu H., Cui Y., Cao Y., Sun X., Xiao J., Li X., Zhang Q., Wang S.
Nat Plants 2017  3  17009
Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.
Nino-Liu, D.O., P.C. Ronald and A.J. Bogdanove
Mol. Plant Pathol. 2006  7(5)  303-324
Pathogen profile Xanthomonas oryzae pathovars: model pathogens of a model crop.
Sun, X., Z. Yang, S. Wang, Q. Zhang
Theor. Appl. Genet. 2003  106  683-687.
Identification of a 47-kb DNA fragment containing Xa4, a locus for bacterial blight resistance in rice.
Muralidharan, K., D. Krishnaveni, G.S. Laha, C.S. Reddy, M. Srinivasprasad and R. Sridhar
RGN 2003  20  96-98
Appraisal of bacterial leaf blight resistance genes in India.
Rutger J.N., Mackill D.J.
Rice Genetics, IV. IRRI, Manila, Philippines 2001    27-38
Application of Mendelian genetics in rice breeding
Wang W, Zhai W, Luo M, Jiang G, Chen X, Li X, Wing RA, Zhu L.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2001  265(1)  118-125
Chromosome landing at the bacterial blight resistance gene Xa4 locus using a deep coverage rice BAC library.
Kaku, H.
RGN 2000  17  78-80.
The additive effect of bacterial blight resistance genes Xa1 and Xa4 in rice.
Wang, W.M., W.X, Zhai, G.H. Jiang, X.W. Chen, X.B. Li and L.H. Zhu
RGN 2000  17  74-76.
Construction of a BAC contig containing Xa4 locus on Chromosome 11.
Endo, N., T. Ogawa and G.S. Khush
Breeding Science 1997  47  27-32.
Isozyme classification of Myanmar rice cultivars resistant to bacterial blight.
Huang, N., E.R. Angeles, J. Domingo, G. Magpantay, S. Singh, G. Zhang, N. Kumaravadivel, J. Bennett and G.S. Khush
Theor. Appl. Genet. 1997  95  313-320.
Pyramiding of bacterial blight resistance genes in rice marker-assisted selection using RFLP and PCR.
Nelson, R.J., E. Ardales, M. Baraoidan, I. Yap, M.L.C. George, D.H. Chen, M. Finckh, A. Bordeos, C.M. Vera Cruz, T. Adhikari, C.C. Mundt, M. Bustamam, W. Cruz, H. Leung, N. Huang, A. Yoshimura, S. McCouch, T.W. Mew and J.E. Leach
Rice Genetics III. IRRI, Manila, Philippines. 1996    267-277.
Exploring the application of molecular markers for improving resistance to bacterial blight.
Yoshimura, A., J.X. Lei, T. Matsumoto, H. Tsunematsu, S. Yoshimura, N. Iwata, M.R. Baraoidan, T.W. Mew and R.J. Nelson
Rice Genetics III. IRRI, Manila, Philippines. 1996    577-581.
Analysis and pyramiding of bacterial blight resistance genes in rice by using DNA markers.
Ogawa, T.
Rice Genetics III. IRRI, Manila, Philippines. 1996    456-459.
Monitoring race distribution and identification of genes for resistance to bacterial leaf blight.
Yoshimura, S., A. Yoshimura, N. Iwata, S.R. McCouch, M.L. Abenes, M.R. Baraoidan, T.W. Mew and R. Nelson
Molecular Breeding 1995  1  375-387.
Tagging and combining bacterial blight resistance genes in rice using RAPD and RFLP markers.
Multani, D.S., K.K. Jena, D.S. Brar, B.G. de los Reyes, E.R. Angeles and G.S. Khush
Theor. Appl. Genet. 1994  88  102-109.
Development of monosomic alien addition lines and introgression of genes from Oryza australiensis Domin.to cultivated rice O. sativa L.
Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994  138  1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
Yoshimura, S., N. Kurata, T. Sasaki and A. Yoshimura
Recent Advances in Breeding 1994  36  33-36.
Genetic analysis of bacterial blight resistance genes in rice by using molecular markers.
Yoshimura, S., A. Yoshimura, R.J. Nelson, S.R. McCouch, T.W. Mew and N. Iwata
Japan. J. Breed. 1993  43(Suppl. 1)  161
Mapping and combining of bacterial blight resistance genes in rice using molecular markers.
Yoshimura, S., A. Yoshimura and N. Iwata
Japan. J. Breed. 1992  42(Suppl. 2)  204-205.
Tagging Xa-1, the bacterial blight resistance gene in rice, by using RAPD markers.
Yoshimura, S., R. Nelson, A. Yoshimura, T.W. Mew and N. Iwata
RGN 1992  9  136-138.
RFLP mapping of the bacterical blight resistance genes Xa-3 and Xa-4.
Yoshimura, S., A. Yoshimura, A. Saito, N. Kishimoto, M. Kawase, M. Yano, M. Nakagahra, T. Ogawa and N. Iwata
Jpn. J. Genet. 1992  67  29-37.
RFLP analysis of introgressed chromosomal segments in three near-isogenic lines of rice for bacterial blight resistance genes, Xa-1, Xa-3 and Xa-4.
McCouch, S.R., G.S. Khush and S.D. Tanksley
Rice Genetics. II. IRRI, Manila, Philippines. 1991    443-449.
Tagging genes for disease and insect resistance via linkage to RFLP markers.
Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew
Japan. J. Breed. 1987  37(Suppl. 1)  176-177.
Relationship among Xa-3, Xa-4 and Xa-4b resistant genes to rice bacterial leaf blight.
Ogawa, T., R.E. Tabien, G.A. Busto, G.S. Khush and T.W. Mew
RGN 1986  3  83-84.
The relationship between Xa-3, Xa-4 and Xa-4b for resistances to rice bacterial blight.
Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew
RGN 1986  3  79-80.
The relationship between genes Xa-3 and Xa-6 for resistance to rice bacterial blight.
Sur, S.C. and G.S. Khush
RGN 1984  1  98-99
Chromosomal location of Xa-4 gene.
Singh, R.J., G.S. Khush and T.W. Mew
Crop Sci. 1983  23(3)  558-560.
A new gene for resistance to bacterial blight in rice.
Sidhu, G.S., G.S. Khush and T.W. Mew
Theor. Appl. Genet. 1978  53  105-111.
Genetic analysis of bacterial blight resistance in seventy-four cultivars of rice, Oryza sativa L.
Petpisit, V., G.S. Khush and H.E. Kauffman
Crop Sci. 1977  17(4)  551-554.
Inheritance of resistance to bacterial blight in rice.
TextPresso Search Search textpresso for XA4 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0061014
Ontologies
Gene Ontology defense response to bacterium( GO:0042742 )
induction of phytoalexin biosynthetic process( GO:0009689 )
plant-type cell wall loosening( GO:0009828 )
jasmonic acid mediated signaling pathway( GO:0009867 )
cell wall cellulose biosynthetic process( GO:0052324 )
Trait Ontology bacterial blight disease resistance( TO:0000175 )
plant height( TO:0000207 )
stem strength( TO:0000051 )
jasmonic acid content( TO:0002668 )
Plant Ontology -
Related Strains
Stocks for Genes 1
Phenotype images
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Last updated
Apr 18, 2017


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