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Basic Information
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CGSNL Gene Symbol
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XA3
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Gene Symbol Synonym
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Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
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CGSNL Gene Name
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XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 3
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Gene Name Synonym
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Xanthomonas oryzae pv. oryzae resistance 3, Xanthomonas campestris pv. oryzae resistance-3, Xanthomonas oryzae pv. oryzae resistance-3, Xanthomonas oryzae pv. oryzae resistance 26
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Protein Name
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Allele
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Chromosome No.
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11
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Explanation
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Resistant to the all Japanese Isolate groups in adult only. [366]. This gene is located on chromosome 11 and tightly linked with Xa4. PO:0009011; plant structure ; PO:0000003; whole plant. AY364476 (replaced by DQ355952). DQ355952, DQ355953. DQ426645, DQ426646, DQ426647. OoRKb1 (O. officinalis), OmRKb1 (O. minuta). wild rice orthologs: OoRKb1 (Xa3/Xa26-2) in O. officinalis (HQ148674), OmRKb1 (Xa3/Xa26-3) in O. minuta (HQ148675). leucine-rich repeat (LRR) receptor kinase-like protein. The second candidate was Xa26 (LOC_Os11g47210), which encodes a receptor kinase-like protein (Zhang et al. 2021).
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Trait Class
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Tolerance and resistance - Disease resistance
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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LOC_Os11g47210.1
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RAP ID
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Os11g0694850
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Zhang F., Hu Z., Wu Z., Lu J., Shi Y., Xu J., Wang X., Wang J., Zhang F., Wang M., Shi X., Cui Y., Vera Cruz C., Zhuo D., Hu D., Li M., Wang W., Zhao X., Zheng T., Fu B., Ali J., Zhou Y., Li Z.
Plant Cell 2021 33(8) 2538-2561
Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics.
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Tang J., Wang Y., Yin W., Dong G., Sun K., Teng Z., Wu X., Wang S., Qian Y., Pan X., Qian Q., Chu C.
Plant Physiol. 2019 181(3) 1295-1313
Mutation of a Nucleotide-Binding Leucine-Rich Repeat Immune Receptor-Type Protein Disrupts Immunity to Bacterial Blight.
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Reinke R., Kim S.M., Kim B.K.
Mol. Genet. Genomics 2018 293(6) 1565-1575
Developing japonica rice introgression lines with multiple resistance genes for brown planthopper, bacterial blight, rice blast, and rice stripe virus using molecular breeding.
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Liu Y., Cao Y., Zhang Q., Li X., Wang S.
Plant Physiol. 2018 178(2) 923-935
A Cytosolic Triosephosphate Isomerase Is a Key Component in Xa3/XA26-Mediated Resistance.
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Chen X., Zuo S., Schwessinger B., Chern M., Canlas P.E., Ruan D., Zhou X., Wang J., Daudi A., Petzold C.J., Heazlewood J.L., Ronald P.C.
Mol Plant 2014 7(5) 874-92
An XA21-Associated Kinase (OsSERK2) Regulates Immunity Mediated by the XA21 and XA3 Immune Receptors.
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Wang M., Yu Y., Haberer G., Marri P.R., Fan C., Goicoechea J.L., Zuccolo A., Song X., Kudrna D., Ammiraju J.S., Cossu R.M., Maldonado C., Chen J., Lee S., Sisneros N., de Baynast K., Golser W., Wissotski M., Kim W., Sanchez P., Ndjiondjop M.N., Sanni K., Long M., Carney J., Panaud O., Wicker T., Machado C.A., Chen M., Mayer K.F., Rounsley S., Wing R.A.
Nat. Genet. 2014 46(9) 982-8
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.
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Hyun-Su Park, Mun-Sik Shin, Ki-Young Kim, Tae-Hwan Noh, So-Hyeon Baek, Jong-Hee Lee, Ki-Yong Ha, Man-Kee Baek, Woo-Jae Kim, Jong-Ho Park, Jae-Soo Yoo, Young-Chan Cho, Bo-Kyeong Kim
Kor. J. Breed. Sci. 2013 45(2) 119-129
Reaction of Single Resistance Genes and Their Pyramiding Effects in Indica and Japonica Rice Against Xanthomonas oryzae pv. oryzae in Korea
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Li H.J., Li X.H., Xiao J.H., Wing R.A., Wang S.P.
Mol Plant 2012 5(1) 281-90
Ortholog Alleles at Xa3/Xa26 Locus Confer Conserved Race-Specific Resistance against Xanthomonas oryzae in Rice.
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Sun X. , Wang G.L.
PLoS One 2011 6(3) e16079
Genome-wide identification, characterization and phylogenetic analysis of the rice LRR-kinases.
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Cao Y,Duan L,Li H,Sun X,Zhao Y,Xu C,Li X,Wang S
Theor. Appl. Genet. 2007 115 887-95
Functional analysis of Xa3/Xa26 family members in rice resistance to Xanthomonas oryzae pv. oryzae.
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Nino-Liu, D.O., P.C. Ronald and A.J. Bogdanove
Mol. Plant Pathol. 2006 7(5) 303-324
Pathogen profile Xanthomonas oryzae pathovars: model pathogens of a model crop.
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Xiang,Y., Cao,Y., Xu,C., Li,X. and Wang,S.
Theor. Appl. Genet. 2006 113(7) 1347-1355
Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26.
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Sun,X., Cao,Y. and Wang,S.
Plant Physiol. 2006 140(3) 998-1008
Point Mutations with Positive Selection Were a Major Force during the Evolution of a Receptor-Kinase Resistance Gene Family of Rice
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Sun,X., Cao,Y., Yang,Z., Xu,C., Li,X., Wang,S. and Zhang,Q.
Plant J. 2004 37(4) 517-527
Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein.
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Muralidharan, K., D. Krishnaveni, G.S. Laha, C.S. Reddy, M. Srinivasprasad and R. Sridhar
RGN 2003 20 96-98
Appraisal of bacterial leaf blight resistance genes in India.
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Yang, Z., X. Sun, S. Wang, Q. Zhang
Theor. Appl. Genet. 2003 106 1467-1472
Genetic and physical mapping of a new gene for bacterial blight resistance in rice.
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Kaku, H. and T. Ogawa
RGN 2000 17 76-78.
The relationship between browning reaction and bacterial blight resistance gene Xa3 in rice.
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Endo, N., T. Ogawa and G.S. Khush
Breeding Science 1997 47 27-32.
Isozyme classification of Myanmar rice cultivars resistant to bacterial blight.
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Yoshimura, A., J.X. Lei, T. Matsumoto, H. Tsunematsu, S. Yoshimura, N. Iwata, M.R. Baraoidan, T.W. Mew and R.J. Nelson
Rice Genetics III. IRRI, Manila, Philippines. 1996 577-581.
Analysis and pyramiding of bacterial blight resistance genes in rice by using DNA markers.
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Ogawa, T.
Rice Genetics III. IRRI, Manila, Philippines. 1996 456-459.
Monitoring race distribution and identification of genes for resistance to bacterial leaf blight.
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Yoshimura, S., A. Yoshimura, N. Iwata, S.R. McCouch, M.L. Abenes, M.R. Baraoidan, T.W. Mew and R. Nelson
Molecular Breeding 1995 1 375-387.
Tagging and combining bacterial blight resistance genes in rice using RAPD and RFLP markers.
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Yoshimura, S., N. Kurata, T. Sasaki and A. Yoshimura
Recent Advances in Breeding 1994 36 33-36.
Genetic analysis of bacterial blight resistance genes in rice by using molecular markers.
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Yoshimura, S., A. Yoshimura, R.J. Nelson, S.R. McCouch, T.W. Mew and N. Iwata
Japan. J. Breed. 1993 43(Suppl. 1) 161
Mapping and combining of bacterial blight resistance genes in rice using molecular markers.
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Yoshimura, S., R. Nelson, A. Yoshimura, T.W. Mew and N. Iwata
RGN 1992 9 136-138.
RFLP mapping of the bacterical blight resistance genes Xa-3 and Xa-4.
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Yoshimura, S., A. Yoshimura, A. Saito, N. Kishimoto, M. Kawase, M. Yano, M. Nakagahra, T. Ogawa and N. Iwata
Jpn. J. Genet. 1992 67 29-37.
RFLP analysis of introgressed chromosomal segments in three near-isogenic lines of rice for bacterial blight resistance genes, Xa-1, Xa-3 and Xa-4.
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Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew
Japan. J. Breed. 1990 40(4) 435-447.
Genetics of resistance in rice cultivars, IR20 and Semora Mangga to Philippine and Japanese races of bacterial blight pathogen.
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Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew
Japan. J. Breed. 1990 40(3) 329-338.
Genetics of resistance in rice cultivar, Sateng to Philippine and Japanese races of bacterial blight pathogen.
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Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew
Japan. J. Breed. 1990 40(2) 183-192.
Genetics of resistance in rice cultivars, Zenith and Cempo Selak to Philippine and Japanese races of bacterial blight pathogen.
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Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew
Japan. J. Breed. 1987 37(Suppl. 1) 176-177.
Relationship among Xa-3, Xa-4 and Xa-4b resistant genes to rice bacterial leaf blight.
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Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew
RGN 1986 3 80-82.
Inheritance of resistance to bacterial blight in Sateng. -A reinvestigation.
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Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew
RGN 1986 3 79-80.
The relationship between genes Xa-3 and Xa-6 for resistance to rice bacterial blight.
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Ogawa, T. and T. Yamamoto
Rice Genetics. IRRI, Manila, Philippines. 1986 471-479.
Inheritance of resistance to bacterial blight in rice.
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Ogawa, T., R.E. Tabien, G.A. Busto, G.S. Khush and T.W. Mew
RGN 1986 3 83-84.
The relationship between Xa-3, Xa-4 and Xa-4b for resistances to rice bacterial blight.
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Singh, R.J., G.S. Khush and T.W. Mew
Crop Sci. 1983 23(3) 558-560.
A new gene for resistance to bacterial blight in rice.
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Sidhu,G.S. G.S.Khush
Phytopathology 1978 68(3) 461-463
Dominance reversal of a bacterial blight resistance gene in some rice cultivars.
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Ogawa, T., T. Morinaka, K. Fujii and T. Kimura
Ann. Phytopath. Soc. Japan 1978 44(2) 137-141.
Inheritance of resistance of rice varieties Kogyoku and Java 14 to bacterial group V of Xanthomonas oryzae.
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Petpisit, V., G.S. Khush and H.E. Kauffman
Crop Sci. 1977 17(4) 551-554.
Inheritance of resistance to bacterial blight in rice.
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Ezuka, A., O. Horino, K. Toriyama, H. Shinoda and T. Morinaka
Bull. Tokai-Kinki Agr. Exp. Stn. 1975 28 124-130.
Inheritance of resistance of rice variety Wase Aikoku 3 to Xanthomonas oryzae.
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DB Reference
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Gramene ID
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GR:0061013,GR:0061358
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Ontologies
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Gene Ontology
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defense response to bacterium( GO:0042742 )
protein serine/threonine kinase activity( GO:0004674 )
ATP binding( GO:0005524 )
integral to membrane( GO:0016021 )
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Trait Ontology
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bacterial blight disease resistance( TO:0000175 )
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Plant Ontology
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whole plant( PO:0000003 )
plant structure( PO:0009011 )
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Related Strains
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Stocks for Genes
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1
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Phenotype images
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Last updated
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Jul 18, 2023
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Update info.