Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SPO11-5
Gene Symbol Synonym OsSPO11-5, OsSPO11-5C, SPO11-1A, SPO11-1B, SPO11-1C, SPO11-1D, OsUBP13, UBP13, OsUBP35, UBP35
CGSNL Gene Name TOPOISOMERASE 6 SUBUNIT A-LIKE PROTEIN
Gene Name Synonym ubiquitin-specific processing protease 13, Ubiquitin-specific protease 35
Protein Name TOPOISOMERASE 6 SUBUNIT A
Allele
Chromosome No. 11
Explanation GU170364(Indica), AY154916/AY154917/AY154918/AY154919(Japonica). GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP35 in Ma et al. 2019.
Trait Class Biochemical character
Expression
Sequence/Locus
cDNA Accession No. AK065551
AK099478
MSU ID LOC_Os11g34270.1
RAP ID Os11g0545300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Ma X., Zhang J., Han B., Tang J., Cui D., Han L.
Plant Cell Rep. 2019  38(3)  321-331
FLA, which encodes a homolog of UBP, is required for chlorophyll accumulation and development of lemma and palea in rice.
Wang D.H., Song W., Wei S.W., Zheng Y.F., Chen Z.S., Han J.D., Zhang H.T., Luo J.C., Qin Y.M., Xu Z.H., Bai S.N.
Front Plant Sci 2018  9  1636
Characterization of the Ubiquitin C-Terminal Hydrolase and Ubiquitin-Specific Protease Families in Rice (<i>Oryza sativa</i>).
An,X.J., Deng,Z.Y. and Wang,T.
PLoS One 2011  6 (5)  e20327
OsSpo11-4, a Rice Homologue of the Archaeal TopVIA Protein, Mediates Double-Strand DNA Cleavage and Interacts with OsTopVIB
TextPresso Search Search textpresso for SPO11-5 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology chromosome( GO:0005694 )
ubiquitin-dependent protein catabolic process( GO:0006511 )
protein deubiquitination( GO:0016579 )
DNA catabolic process, endonucleolytic( GO:0000737 )
endodeoxyribonuclease activity, producing 3'-phosphomonoesters( GO:0016889 )
DNA binding( GO:0003677 )
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Aug 19, 2019


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