Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol R5S1
Gene Symbol Synonym R5s1*, r5s, R5s1
CGSNL Gene Name 5S RIBOSOMAL DNA 1
Gene Name Synonym 5S ribosomal DNA1 (5S rRNA-1), 5S ribosomal DNA-1(5S rRNA-1), 5S ribosomal DNA-1, 5S rRNA-1, 5S ribosomal RNA, 5S rRNA, 5S rDNA
Protein Name
Allele
Chromosome No. 11
Explanation D26370. M18171. Z11475. Z11411-Z11414, Z11469-Z11474 (wild rice species). EF197121-EF197133, EU439271-EU439291 (indica and other wild rice species).
Trait Class Biochemical character
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID -
RAP ID -
Links -
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Zhu,X.Y., Cai,D.T. and Ding,Y.
Genome 2008  51(5)  332-340
Molecular and cytological characterization of 5S rDNA in Oryza species: genomic organization and phylogenetic implications
Kamisugi,Y., Nakayama,S., Nakajima,R., Ohtsubo,H., Ohtsubo,E. and Fukui,K.
Mol. Gen. Genet. 1994  245(2)  133-138
Physical mapping of the 5S ribosomal RNA genes on rice chromosome 11.
Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994  138  1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
Chung, M.C., C.N. Ning and H.K. Wu
Bot. Bull. Acad. Sin. 1993  34  43-55.
Localization of ribosomal RNA genes on rice chromosome.
Tanksley, S.D., T.M. Fulton and S.R. McCouch
Genetic Maps, Locus Maps of Complex Genomes, Plants. S.J. O'Brien ed. Cold Spring Harbour Lab. Press. 1993  Book 6  61-79.
Linkage map of rice (Oryza sativa) (2N=24).
McIntyre,C.L., Winberg,B., Houchins,K., Appels,R. and Baum,B.R.
Plant Syst. Evol. In press REMARK (sites) 1992  183  249-264
Relationships between Oryza species based on 5S DNA sequences
McCouch, S.R., G. Kochert, Z.H. Yu, Z.Y. Wang, G.S. Khush, W.R. Coffman and S.D. Tanksley
Theor. Appl. Genet. 1988  76  815-829.
Molecular mapping of rice chromosomes.
Reddy,P.M.S. and Padayatty,J.D.
Plant Mol. Biol. 1987  9  443-451
5S-rRNA genes in rice embryos
TextPresso Search Search textpresso for R5S1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060712
Ontologies
Gene Ontology rDNA binding( GO:0000182 )
translation( GO:0006412 )
ribosome( GO:0005840 )
structural constituent of ribosome( GO:0003735 )
peptide biosynthetic process( GO:0043043 )
mitochondrial small ribosomal subunit( GO:0005763 )
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Aug 7, 2014


Login ID
Password
/rice/oryzabase