Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol DEP3
Gene Symbol Synonym dep3, OspPLAIIIdelta, pPLAIIIdelta
Gene Name Synonym dense and erect panicle 3, Patatin-related phospholipase A III delta
Protein Name
Allele dep3
Chromosome No. 6
Explanation DEP3 gene was predicted to encode a patatin-like phospholipase A2 (PLA2) superfamily domain-containing protein. Control panicle length, grain number per panicle. TO:0000800: inflorescence density, TO:0000847: panicle anatomy and morphology trait. TO:0000975: grain width.
Trait Class Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
cDNA Accession No. -
MSU ID LOC_Os06g46350.1
RAP ID Os06g0677000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Wang Y., Lv Y., Yu H., Hu P., Wen Y., Wang J., Tan Y., Wu H., Zhu L., Wu K., Chai B., Liu J., Zeng D., Zhang G., Zhu L., Gao Z., Dong G., Ren D., Shen L., Zhang Q., Li Q., Guo L., Xiong G., Qian Q., Hu J.
Plant Commun 2023    100673
GR5 acts in the G protein pathway to regulate grain size in rice.
Cui D., Zhou H., Ma X., Lin Z., Sun L., Han B., Li M., Sun J., Liu J., Jin G., Wang X., Cao G., Deng X.W., He H., Han L.
Plant Commun 2022  3(3)  100325
Genomic insights on the contribution of introgressions from Xian/Indica to the genetic improvement of Geng/Japonica rice cultivars.
Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019   
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
Liu G., Zhang K., Ai J., Su Y., Deng X., Hong Y., Wang X.
J. Exp. Bot. 2015   
Patatin-related phospholipase A, pPLAIIIalpha, modulates the longitudinal growth of vegetative tissues and seeds in rice.
Liang W., Shang F., Lin Q., Lou C., Zhang J.
Gene 2014  537(1)  1-5
Tillering and panicle branching genes in rice.
Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013  16(2)  213-20
Genes offering the potential for designing yield-related traits in rice.
Shahinnia F., Druka A., Franckowiak J., Morgante M., Waugh R., Stein N.
Theoretical and Applied Genetics 2012  124  373-384
High resolution mapping of dense spike-ar ( to the genetic centromere of barley chromosome 7H
Qiao Y,Piao R,Shi J,Lee SI,Jiang W,Kim BK,Lee J,Han L,Ma W,Koh HJ
Theor. Appl. Genet. 2011  122(7)  1439-49
Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.).
TextPresso Search Search textpresso for DEP3 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology lipid metabolic process( GO:0006629 )
hydrolase activity( GO:0016787 )
Trait Ontology grain yield( TO:0000396 )
grain number( TO:0002759 )
inflorescence branching( TO:0000050 )
grain size( TO:0000397 )
grain length( TO:0000734 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Jan 12, 2024