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Basic Information
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CGSNL Gene Symbol
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GLN1;1
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Gene Symbol Synonym
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OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1
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CGSNL Gene Name
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GLUTAMINE SYNTHETASE 1;1
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Gene Name Synonym
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cytosolic glutamine synthethase 1;1, cytosolic glutamine synthase 1, glutamine synthetase 1;1, Glutamine synthetase, glutamine synthetase 1, glutamine synthetase shoot isozyme, glutamate:ammonia ligase gamma, Gln synthetase 1-1
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Protein Name
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GLUTAMINE SYNTHETASE 1;1
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Allele
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Osgs1;1
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Chromosome No.
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2
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Explanation
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X14245, AB037595, AB037664. P14656. C25787, AU102080. D15766. KC611121-KC611131 (O. sativa and wild rice species, partial cds). XB21 interacting protein (XB21IP). TO:0020098: nitrate sensitivity. TO:0020093: nitrogen content. GO:0006541: glutamine metabolic process.
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Trait Class
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Biochemical character
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK071969
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MSU ID
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LOC_Os02g50240.1
LOC_Os02g50240.2
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RAP ID
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Os02g0735200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
)
RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Zhao M., Gao Z., Kuang C., Chen X.
Front Plant Sci 2024 15 1381491
Partial root-zone drying combined with nitrogen treatments mitigates drought responses in rice.
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Cheng W., Ren Y., Wang J., Chen C., Fang C., Peng L., Zhang D., Tao L., Zhan Y., Wu K., Wu Y., Liu B., Fu X., Ye Y.
Plant Physiol. 2024 197(1)
Mutation of GLR2 confers enhanced glufosinate resistance and salt tolerance in rice.
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Tuiwong P., Cho H.K., Rouached H., Prom-U-Thai C.
Plants (Basel) 2024 13(23)
Synergistic Effects of Nitrogen and Zinc Foliar Application on Yield and Nutrient Accumulation in Rice at Various Growth Stages.
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Gao J., Ge S., Wang H., Fang Y., Sun L., He T., Cheng X., Wang D., Zhou X., Cai H., Li C., Liu Y., E Y., Meng J., Chen W.
Front Plant Sci 2023 14 1131937
Biochar-extracted liquor stimulates nitrogen related gene expression on improving nitrogen utilization in rice seedling.
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Seo J.S., Kim S.H., Shim J.S., Um T., Oh N., Park T., Kim Y.S., Oh S.J., Kim J.K.
Plant Physiol. 2023
The rice NUCLEAR FACTOR-YA5 and MICRORNA169a module promotes nitrogen utilization during nitrogen deficiency.
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Ren Y., Liu B., Jiang H., Cheng W., Tao L., Wu K., Wang H., Shen G., Fang Y., Zhang C., Wu Y., Fu X., Ye Y.
Plant Biotechnol. J. 2023
Precision editing of GLR1 confers glufosinate resistance without yield penalty in rice.
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Ji C., Li J., Jiang C., Zhang L., Shi L., Xu F., Cai H.
Journal of Advanced Research 2022 35 187-198
Zinc and nitrogen synergistic act on root-to-shoot translocation and preferential distribution in rice.
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Liu C., Ma T., Yuan D., Zhou Y., Long Y., Li Z., Dong Z., Duan M., Yu D., Jing Y., Bai X., Wang Y., Hou Q., Liu S., Zhang J.S., Chen S.Y., Li D., Liu X., Li Z., Wang W., Li J., Wei X., Ma B., Wan X.
Plant Biotechnol. J. 2022 20(8) 1470-1486
The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.
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Lee S., Marmagne A., Park J., Fabien C., Yim Y., Kim S.J., Kim T.H., Lim P.O., Masclaux-Daubresse C., Nam H.G.
Plant J. 2020 103(1) 7-20
Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation.
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Paul K., Saha C., Nag M., Mandal D., Naiya H., Sen D., Mitra S., Kumar M., Bose D., Mukherjee G., Naskar N., Lahiri S., Das Ghosh U., Tripathi S., Sarkar M.P., Banerjee M., Kleinert A., Valentine A.J., Tripathy S., Sinharoy S., Seal A.
Plant Cell 2020 32(2) 486-507
A Tripartite Interaction among the Basidiomycete <i>Rhodotorula mucilaginosa</i>, N2-Fixing Endobacteria, and Rice Improves Plant Nitrogen Nutrition.
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Kusano M., Fukushima A., Tabuchi-Kobayashi M., Funayama K., Kojima S., Maruyama K., Yamamoto Y.Y., Nishizawa T., Kobayashi M., Wakazaki M., Sato M., Toyooka K., Osanai-Kondo K., Utsumi Y., Seki M., Fukai C., Saito K., Yamaya T.
Plant Physiol. 2020 182(4) 1894-1909
Cytosolic GLUTAMINE SYNTHETASE1;1 Modulates Metabolism and Chloroplast Development in Roots.
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Yi J., Gao J., Zhang W., Zhao C., Wang Y., Zhen X.
Front Plant Sci 2019 10 1061
Differential Uptake and Utilization of Two Forms of Nitrogen in <i>Japonica</i> Rice Cultivars From North-Eastern China.
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James D., Borphukan B., Fartyal D., Ram B., Singh J., Manna M., Sheri V., Panditi V., Yadav R., Achary V.M.M., Reddy M.K.
Front Plant Sci 2018 9 786
Concurrent Overexpression of <i>OsGS1;1</i> and <i>OsGS2</i> Genes in Transgenic Rice (<i>Oryza sativa</i> L.): Impact on Tolerance to Abiotic Stresses.
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Caddell D.F., Park C.J., Thomas N.C., Canlas P.E., Ronald P.C.
Rice (N Y) 2017 10(1) 23
Silencing of the Rice Gene LRR1 Compromises Rice XA21 transcript Accumulation and XA21-Mediated Immunity.
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Onda Y., Miyagi A., Takahara K., Uchimiya H., Kawai-Yamada M.
Plant Biol (Stuttg) 2014 16(4) 819-24
Effects of NAD kinase 2 overexpression on primary metabolite profiles in rice leaves under elevated carbon dioxide.
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Yamaya T., Kusano M.
J. Exp. Bot. 2014
Evidence supporting distinct functions of three cytosolic glutamine synthetases and two NADH-glutamate synthases in rice.
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Zhu,T., Xu,P.Z., Liu,J.P., Peng,S., Mo,X.C. and Gao,L.Z.
Mol. Phylogenet. Evol. 2014 70 348-361
Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions
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Yang B.a, Wang X.M.a, Ma H.Y.a, Jia Y.a, Li X.b, Dai C.C.a
Plant Growth Regul. 2014 73 165-179
Effects of the fungal endophyte Phomopsis liquidambari on nitrogen uptake and metabolism in rice
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Bao A., Zhao Z., Ding G., Shi L., Xu F., Cai H.
PLoS ONE 2014 9(4) e95581
Accumulated expression level of cytosolic glutamine synthetase 1 gene (OsGS1;1 or OsGS1;2) alter plant development and the carbon-nitrogen metabolic status in rice.
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Lee H.J., Abdula S.E., Jang D.W., Park S.H., Yoon U.H., Jung Y.J., Kang K.K., Nou I.S., Cho Y.G.
Plant Cell Rep. 2013 32(10) 1521-9
Overexpression of the glutamine synthetase gene modulates oxidative stress response in rice after exposure to cadmium stress.
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Wang H., Wu Z., Han J., Zheng W., Yang C.
PLoS ONE 2012 7(5) e37817
Comparison of ion balance and nitrogen metabolism in old and young leaves of alkali-stressed rice plants.
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Gaur V.S., Singh U.S., Gupta A.K., Kumar A.
Mol. Biol. Rep. 2012 39(8) 8035-44
Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen.
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Wang H., Ahan J., Wu Z., Shi D., Liu B., Yang C.
Plant Soil 2012 355 131-147
Alteration of nitrogen metabolism in rice variety 'Nipponbare' induced by alkali stress
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Kusano M,Tabuchi M,Fukushima A,Funayama K,Diaz C,Kobayashi M,Hayashi N,Tsuchiya YN,Takahashi H,Kamata A,Yamaya T,Saito K
Plant J. 2011 66(3) 456-66
Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice.
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Obara M., Takeda T., Hayakawa T., Yamaya T.
Soil Science and Plant Nutrition 2011 57 80-92
Mapping quantitative trait loci controlling root length in rice seedlings grown with low or sufficient NH+4 supply using backcross recombinant lines derived from a cross between Oryza sativa L. and Oryza glaberrima Steud
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Tabuchi,M., Abiko,T. and Yamaya,T.
J. Exp. Bot. 2007 58(9) 2319-2327
Assimilation of ammonium ions and reutilization of nitrogen in rice (Oryza sativa L.)
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Tabuchi,M., Sugiyama,K., Ishiyama,K., Inoue,E., Sato,T., Takahashi,H. and Yamaya,T.
Plant J. 2005 42(5) 641-651
Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1.
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Mase K., Sato K., Nakano Y., Nishikubo N., Tsuboi Y., Zhou J., Kitano H., Katayama Y.
Plant Cell Rep. 2005 24(8) 487-93
The ectopic expression of phenylalanine ammonia lyase with ectopic accumulation of polysaccharide-linked hydroxycinnamoyl esters in internode parenchyma of rice mutant Fukei 71.
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Ishiyama,K., Inoue,E., Tabuchi,M., Yamaya,T. and Takahashi,H.
Plant Cell Physiol. 2004 45(11) 1640-1647
Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots.
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Yamaguchi,T., Nakayama,K., Hayashi,T., Yazaki,J., Kishimoto,N., Kikuchi,S. and Koike,S.
Biosci. Biotechnol. Biochem. 2004 68(6) 1315-1323
cDNA Microarray Analysis of Rice Anther Genes under Chilling Stress at the Microsporogenesis Stage Revealed Two Genes with DNA Transposon Castaway in the 5'-Flanking Region.
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Sakurai N., Katayama Y., Yamaya T.
Physiol Plant 2001 113(3) 400-408
Overlapping expression of cytosolic glutamine synthetase and phenylalanine ammonia-lyase in immature leaf blades of rice.
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Kojima,S., Hanzawa,S., Hayakawa,T., Hayashi,M. and Yamaya,T.
Plant Physiol. 2000 122(4) 1459
Nucleotide sequence of a genomic DNA (Accession No. AB037664) and a cDNA (Accession No. AB037595) encoding cytosolic glutamine synthetase in Sasanishiki, a leading cultivar of rice in northern Japan (PGR00-048)
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Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994 6(4) 615-624
Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
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Sakamoto,A., Ogawa,M., Masumura,T., Shibata,D., Takeba,G., Tanaka,K. and Fujii,S.
Plant Mol. Biol. 1989 13(5) 611-614
Three cDNA sequences coding for glutamine synthetase polypeptides in Oryza sativa L.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to nutrient levels( GO:0031667 )
cellular response to nitrogen starvation( GO:0006995 )
response to starvation( GO:0042594 )
response to nutrient( GO:0007584 )
response to zinc ion( GO:0010043 )
response to fungus( GO:0009620 )
response to symbiotic fungus( GO:0009610 )
nitrogen compound metabolic process( GO:0006807 )
tricarboxylic acid cycle( GO:0006099 )
carbohydrate metabolic process( GO:0005975 )
chloroplast organization( GO:0009658 )
response to water deprivation( GO:0009414 )
response to osmotic stress( GO:0006970 )
leaf senescence( GO:0010150 )
ATP binding( GO:0005524 )
cytoplasm( GO:0005737 )
glutamine biosynthetic process( GO:0006542 )
glutamate-ammonia ligase activity( GO:0004356 )
seed maturation( GO:0010431 )
response to herbicide( GO:0009635 )
response to salt stress( GO:0009651 )
response to ammonium ion( GO:0060359 )
response to nitrate( GO:0010167 )
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Trait Ontology
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temperature response trait( TO:0000432 )
seed maturation( TO:0002661 )
leaf senescence( TO:0000249 )
plant height( TO:0000207 )
leaf elongation rate( TO:0000360 )
fruit ripening trait( TO:0002633 )
panicle size( TO:0006032 )
spikelet sterility( TO:0000436 )
drought tolerance( TO:0000276 )
osmotic response sensitivity( TO:0000095 )
salt tolerance( TO:0006001 )
glufosinate sensitivity( TO:0005007 )
proline content( TO:0006002 )
chloroplast development trait( TO:0002715 )
sugar content( TO:0000333 )
amino acid content( TO:0002673 )
zinc sensitivity( TO:0000351 )
nutrient sensitivity( TO:0000480 )
nitrogen sensitivity( TO:0000011 )
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Plant Ontology
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leaf lamina vascular system( PO:0000048 )
seed maturation stage( PO:0007632 )
4 leaf senescence stage( PO:0001054 )
root( PO:0009005 )
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Related Strains
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Phenotype images
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Last updated
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Jun 4, 2025
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