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Basic Information
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CGSNL Gene Symbol
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PIN9
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Gene Symbol Synonym
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OsPIN9
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CGSNL Gene Name
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PIN PROTEIN 9
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Gene Name Synonym
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Protein Name
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PIN PROTEIN 9
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Allele
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pin9
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Chromosome No.
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1
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Explanation
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BR000838. GO:1901698: response to nitrogen compound. GO:0060918: auxin transport. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:2000280: regulation of root development. GO:2000012: regulation of auxin polar transport.
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Trait Class
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Biochemical character
Vegetative organ - Culm
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK059229
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MSU ID
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LOC_Os01g58860.1
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RAP ID
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Os01g0802700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Dong Y., Wainaina C.M., Kojima T., Inukai Y.
Front Plant Sci 2025 16 1718647
OUR1/OsbZIP1-<i>OsPIN9</i> regulatory module controls auxin-dependent crown root formation in rice.
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Ouyang Q., Zhang Y., Yang X., Yang C., Hou D., Liu H., Xu H.
Plants (Basel) 2023 12(15)
Overexpression of <i>OsPIN9</i> Impairs Chilling Tolerance via Disturbing ROS Homeostasis in Rice.
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Cui J., Nishide N., Mashiguchi K., Kuroha K., Miya M., Sugimoto K., Itoh J.I., Yamaguchi S., Izawa T.
Nat Commun 2023 14(1) 3191
Fertilization controls tiller numbers via transcriptional regulation of a MAX1-like gene in rice cultivation.
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Huang Z.H., Bao K., Jing Z.H., Wang Q., Duan H.F., Zhang S., Tao W.W., Wu Q.N.
Front Plant Sci 2022 13 931063
Euryale <i>Small Auxin Up RNA62</i> promotes cell elongation and seed size by altering the distribution of indole-3-acetic acid under the light.
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Wang H.Q., Xuan W., Huang X.Y., Mao C., Zhao F.J.
Plant Cell Physiol. 2021 62(1) 166-177
Cadmium Inhibits lateral root Emergence in Rice by Disrupting OsPIN-mediated Auxin Distribution and the Protective Effect of OsHMA3.
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Yang J., Ji L., Liu S., Jing P., Hu J., Jin D., Wang L., Xie G.
J. Exp. Bot. 2021
The CaM1-Associated CCaMK-MKK1/6 cascade positively affects the lateral root growth through auxin signaling under salt stress in rice.
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Pan J., Li Z., Wang Q., Yang L., Yao F., Liu W.
Plant Sci. 2020 290 110318
An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.
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Zhao Y.F., Peng T., Sun H.Z., Teotia S., Wen H.L., Du Y.X., Zhang J., Li J.Z., Tang G.L., Xue H.W., Zhao Q.Z.
Plant Biotechnol. J. 2019 17(4) 712-723
miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.
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Zhou S., Jiang W., Long F., Cheng S., Yang W., Zhao Y., Zhou D.X.
Plant Cell 2017 29(5) 1088-1104
Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of crown root Meristem.
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Xu Y.X., Xiao M.Z., Liu Y., Fu J.L., He Y., Jiang D.A.
Plant Mol. Biol. 2017
The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.
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Ma Y., Yang C., He Y., Tian Z., Li J.
J. Exp. Bot. 2017 68(17) 4885-4898
Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.
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Singh P., Mohanta T.K., Sinha A.K.
PLoS ONE 2015 10(4) e0123620
Unraveling the Intricate Nexus of Molecular Mechanisms Governing Rice Root Development: OsMPK3/6 and Auxin-Cytokinin Interplay.
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Xu J., Zha M., Li Y., Ding Y., Chen L., Ding C., Wang S.
Plant Cell Rep. 2015 34(9) 1647-62
The interaction between nitrogen availability and auxin, cytokinin, and strigolactone in the control of shoot branching in rice (Oryza sativa L.).
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Zou Y., Liu X., Wang Q., Chen Y., Liu C., Qiu Y., Zhang W.
Biochim. Biophys. Acta 2014 1840(6) 1676-1685
OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.
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ChenJia Shen, YouHuang Bai, SuiKang Wang, SaiNa Zhang, YunRong Wu, Chen M., DeAn Jiang, YanHua Qi
FEBS J. 2010 277(14) 2954-69
Expression profile of PIN, AUX/LAX and PGP auxin transporter gene families in Sorghum bicolor under phytohormone and abiotic stress.
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Miyashita Y., Takasugi T., Ito Y.
Plant Science 2010 178 424-428
Identification and expression analysis of PIN genes in rice
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Wang JR,Hu H,Wang GH,Li J,Chen JY,Wu P
Mol Plant 2009 2(4) 823-31
Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones.
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Liu S., Wang J., Wang L., Wang X., Xue Y., WU P., Shou H.
Cell Res. 2009 19(9) 1110-9
Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family.
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Carraro N., Forestan C., Canova S., Traas J., Varotto S.
Plant Physiol. 2006 142(1) 254-64
ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize.
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Ivan A Paponov, William D Teale, Trebar M., Blilou I., Palme K.
Trends Plant Sci. 2005 10(4) 170-7
The PIN auxin efflux facilitators: evolutionary and functional perspectives.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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positive regulation of auxin mediated signaling pathway( GO:0010929 )
response to nutrient( GO:0007584 )
negative gravitropism( GO:0009959 )
response to oxidative stress( GO:0006979 )
regulation of programmed cell death( GO:0043067 )
auxin mediated signaling pathway( GO:0009734 )
response to hormone stimulus( GO:0009725 )
plasma membrane( GO:0005886 )
lateral root formation( GO:0010311 )
response to salt stress( GO:0009651 )
root development( GO:0048364 )
response to cytokinin stimulus( GO:0009735 )
response to auxin stimulus( GO:0009733 )
transmembrane transport( GO:0055085 )
integral to membrane( GO:0016021 )
response to cadmium ion( GO:0046686 )
response to cold( GO:0009409 )
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Trait Ontology
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nitrogen sensitivity( TO:0000011 )
plant growth hormone sensitivity( TO:0000401 )
auxin sensitivity( TO:0000163 )
cytokinin sensitivity( TO:0000167 )
root development trait( TO:0000656 )
salt tolerance( TO:0006001 )
cold tolerance( TO:0000303 )
plant height( TO:0000207 )
adventitious root number( TO:0001006 )
root length( TO:0000227 )
hydrogen peroxide content( TO:0000605 )
oxidative stress( TO:0002657 )
gravity response trait( TO:0002693 )
leaf rolling tolerance( TO:0002662 )
growth and development trait( TO:0000357 )
auxin content( TO:0002672 )
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Plant Ontology
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root development stage( PO:0007520 )
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Related Strains
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Phenotype images
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Last updated
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Aug 2, 2026
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Update info.