|
Basic Information
|
|
CGSNL Gene Symbol
|
PIN5B
|
|
Gene Symbol Synonym
|
PIN5C, OsPIN5c, OsPIN5b, PIN4
|
|
CGSNL Gene Name
|
PIN PROTEIN 5B
|
|
Gene Name Synonym
|
PIN PROTEIN 5C, PROBABLE AUXIN EFFLUX CARRIER COMPONENT 5C
|
|
Protein Name
|
PIN PROTEIN 5B
|
|
Allele
|
ospin5b, ospin5b-1, ospin5b-13
|
|
Chromosome No.
|
8
|
|
Explanation
|
BR000836. OsPIN5c in Zou et al. 2014, Liu et al. 2023. PIN4 in Zhang et al. 2020. GO:0060918: auxin transport. TO:0001041: root yield. TO:0000820: leaf vein morphology trait. TO:0000748: leaf morphology trait.
|
|
Trait Class
|
Biochemical character
Vegetative organ - Leaf
Vegetative organ - Culm
Vegetative organ - Root
Reproductive organ - panicle
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
|
|
Expression
|
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
AK100297
|
|
MSU ID
|
LOC_Os08g41720.1
|
|
RAP ID
|
Os08g0529000
|
|
Links
|
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
|
INSD Accession List
(Test version)
|
-
|
|
Map
|
|
Locate(cM)
|
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Liu Q., Teng S., Deng C., Wu S., Li H., Wang Y., Wu J., Cui X., Zhang Z., Quick W.P., Brutnell T.P., Sun X., Lu T.
Plant Cell 2023
SHORT ROOT and INDETERMINATE DOMAIN family members govern PIN-FORMED expression to regulate minor vein differentiation in rice.
|
|
Xu K., Lou Q., Wang D., Li T., Chen S., Li T., Luo L., Chen L.
BMC Plant Biol. 2023 23(1) 319
Overexpression of a novel small auxin-up RNA gene, OsSAUR11, enhances rice deep rootedness.
|
|
Zhang Q., Xie J., Zhu X., Ma X., Yang T., Khan N.U., Zhang S., Liu M., Li L., Liang Y., Pan Y., Li D., Li J., Li Z., Zhang H., Zhang Z.
Plant Biotechnol. J. 2023 21(5) 1044-1057
Natural variation in tiller number 1 affects its interaction with TIF1 to regulate tillering in rice.
|
|
Ruan N., Dang Z., Wang M., Cao L., Wang Y., Liu S., Tang Y., Huang Y., Zhang Q., Xu Q., Chen W., Li F.
J. Exp. Bot. 2022 73(8) 2320-2335
FRAGILE CULM 18 encodes a UDP-glucuronic acid decarboxylase required for xylan biosynthesis and plant growth in rice.
|
|
Xu X., E Z., Zhang D., Yun Q., Zhou Y., Niu B., Chen C.
Plant Physiol. 2021 185(3) 934-950
OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice.
|
|
Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020 101(6) 1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
|
|
Zhang Y., Du H., Gui Y., Xu F., Liu J., Zhang J., Xu W.
J. Exp. Bot. 2020 71(9) 2740-2751
Moderate water stress in rice induces rhizosheath formation associated with abscisic acid and auxin responses.
|
|
Shuen-Fang Lo, Ming-Lung Cheng, Yue-Ie Caroline Hsing, Yi-Shih Chen, Kuo-Wei Lee, Ya-Fang Hong, Hsiao Y., An-Shan Hsiao, Pei-Jing Chen, Lai-In Wong, Nan-Chen Chen, Reuzeau C., Tuan-Hua David Ho, Su-May Yu
Plant Biotechnol. J. 2020
Rice Big Grain 1 promotes cell division to enhance organ development, stress tolerance and grain yield.
|
|
Zeng Y., Wen J., Zhao W., Wang Q., Huang W.
Front Plant Sci 2019 10 1663
Rational Improvement of Rice Yield and cold tolerance by Editing the Three Genes <i>OsPIN5b</i>, <i>GS3</i>, and <i>OsMYB30</i> With the CRISPR-Cas9 System.
|
|
Wang Y., Zhang T., Wang R., Zhao Y.
J. Exp. Bot. 2018 69(2) 255-263
Recent advances in auxin research in rice and their implications for crop improvement.
|
|
He Q., Yang L., Hu W., Zhang J., Xing Y.
Sci Rep 2018 8(1) 14051
Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.
|
|
Xu Y.X., Xiao M.Z., Liu Y., Fu J.L., He Y., Jiang D.A.
Plant Mol. Biol. 2017
The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.
|
|
Lu G., Coneva V., Casaretto J.A., Ying S., Mahmood K., Liu F., Nambara E., Bi Y.M., Rothstein S.J.
Plant J. 2015 83(5) 913-25
OsPIN5b modulates rice (Oryza sativa) plant architecture and yield by changing auxin homeostasis, transport and distribution.
|
|
Zhao F.Y.a, Han M.M.a, Zhang S.Y.b, Ren J.a, Hu F.a, Wang X.a
Russian Journal of Plant Physiology 2014 61 608-618
MAPKs as a cross point in H2O2 and auxin signaling under combined cadmium and zinc stress in rice roots
|
|
Zou Y., Liu X., Wang Q., Chen Y., Liu C., Qiu Y., Zhang W.
Biochim. Biophys. Acta 2014 1840(6) 1676-1685
OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.
|
|
ChenJia Shen, YouHuang Bai, SuiKang Wang, SaiNa Zhang, YunRong Wu, Chen M., DeAn Jiang, YanHua Qi
FEBS J. 2010 277(14) 2954-69
Expression profile of PIN, AUX/LAX and PGP auxin transporter gene families in Sorghum bicolor under phytohormone and abiotic stress.
|
|
Miyashita Y., Takasugi T., Ito Y.
Plant Science 2010 178 424-428
Identification and expression analysis of PIN genes in rice
|
|
Wang JR,Hu H,Wang GH,Li J,Chen JY,Wu P
Mol Plant 2009 2(4) 823-31
Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones.
|
|
Liu S., Wang J., Wang L., Wang X., Xue Y., WU P., Shou H.
Cell Res. 2009 19(9) 1110-9
Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family.
|
|
Carraro N., Forestan C., Canova S., Traas J., Varotto S.
Plant Physiol. 2006 142(1) 254-64
ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize.
|
|
Ivan A Paponov, William D Teale, Trebar M., Blilou I., Palme K.
Trends Plant Sci. 2005 10(4) 170-7
The PIN auxin efflux facilitators: evolutionary and functional perspectives.
|
|
DB Reference
|
|
Gramene ID
|
-
|
|
Ontologies
|
|
Gene Ontology
|
response to water( GO:0009415 )
auxin homeostasis( GO:0010252 )
endoplasmic reticulum( GO:0005783 )
transmembrane transport( GO:0055085 )
integral to membrane( GO:0016021 )
|
|
Trait Ontology
|
panicle length( TO:0000040 )
tiller number( TO:0000346 )
water stress trait( TO:0000237 )
auxin content( TO:0002672 )
plant height( TO:0000207 )
leaf number( TO:0000241 )
seed set percent( TO:0000455 )
yield trait( TO:0000371 )
leaf curling( TO:0002681 )
vascular tissue related trait( TO:0000470 )
|
|
Plant Ontology
|
vascular tissue development stage( PO:0025424 )
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Mar 10, 2025
|
Update info.
Click here for feedback