Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PIN5B
Gene Symbol Synonym PIN5C, OsPIN5c, OsPIN5b, PIN4
Protein Name PIN PROTEIN 5B
Allele ospin5b, ospin5b-1, ospin5b-13
Chromosome No. 8
Explanation BR000836. OsPIN5c in Zou et al. 2014. PIN4 in Zhang et al. 2020. GO:0060918: auxin transport. TO:0001041: root yield.
Trait Class Biochemical character
Vegetative organ - Leaf
Vegetative organ - Culm
Vegetative organ - Root
Reproductive organ - panicle
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
cDNA Accession No. AK100297
MSU ID LOC_Os08g41720.1
RAP ID Os08g0529000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Zhang Q., Xie J., Zhu X., Ma X., Yang T., Khan N.U., Zhang S., Liu M., Li L., Liang Y., Pan Y., Li D., Li J., Li Z., Zhang H., Zhang Z.
Plant Biotechnol. J. 2023  21(5)  1044-1057
Natural variation in tiller number 1 affects its interaction with TIF1 to regulate tillering in rice.
Xu K., Lou Q., Wang D., Li T., Chen S., Li T., Luo L., Chen L.
BMC Plant Biol. 2023  23(1)  319
Overexpression of a novel small auxin-up RNA gene, OsSAUR11, enhances rice deep rootedness.
Xu X., E Z., Zhang D., Yun Q., Zhou Y., Niu B., Chen C.
Plant Physiol. 2021  185(3)  934-950
OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice.
Shuen-Fang Lo, Ming-Lung Cheng, Yue-Ie Caroline Hsing, Yi-Shih Chen, Kuo-Wei Lee, Ya-Fang Hong, Hsiao Y., An-Shan Hsiao, Pei-Jing Chen, Lai-In Wong, Nan-Chen Chen, Reuzeau C., Tuan-Hua David Ho, Su-May Yu
Plant Biotechnol. J. 2020   
Rice Big Grain 1 promotes cell division to enhance organ development, stress tolerance and grain yield.
Zhang Y., Du H., Gui Y., Xu F., Liu J., Zhang J., Xu W.
J. Exp. Bot. 2020  71(9)  2740-2751
Moderate water stress in rice induces rhizosheath formation associated with abscisic acid and auxin responses.
Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020  101(6)  1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
Zeng Y., Wen J., Zhao W., Wang Q., Huang W.
Front Plant Sci 2019  10  1663
Rational Improvement of Rice Yield and cold tolerance by Editing the Three Genes <i>OsPIN5b</i>, <i>GS3</i>, and <i>OsMYB30</i> With the CRISPR-Cas9 System.
Wang Y., Zhang T., Wang R., Zhao Y.
J. Exp. Bot. 2018  69(2)  255-263
Recent advances in auxin research in rice and their implications for crop improvement.
He Q., Yang L., Hu W., Zhang J., Xing Y.
Sci Rep 2018  8(1)  14051
Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.
Xu Y.X., Xiao M.Z., Liu Y., Fu J.L., He Y., Jiang D.A.
Plant Mol. Biol. 2017   
The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.
Lu G., Coneva V., Casaretto J.A., Ying S., Mahmood K., Liu F., Nambara E., Bi Y.M., Rothstein S.J.
Plant J. 2015  83(5)  913-25
OsPIN5b modulates rice (Oryza sativa) plant architecture and yield by changing auxin homeostasis, transport and distribution.
Zhao F.Y.a, Han M.M.a, Zhang S.Y.b, Ren J.a, Hu F.a, Wang X.a
Russian Journal of Plant Physiology 2014  61  608-618
MAPKs as a cross point in H2O2 and auxin signaling under combined cadmium and zinc stress in rice roots
Zou Y., Liu X., Wang Q., Chen Y., Liu C., Qiu Y., Zhang W.
Biochim. Biophys. Acta 2014  1840(6)  1676-1685
OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.
ChenJia Shen, YouHuang Bai, SuiKang Wang, SaiNa Zhang, YunRong Wu, Chen M., DeAn Jiang, YanHua Qi
FEBS J. 2010  277(14)  2954-69
Expression profile of PIN, AUX/LAX and PGP auxin transporter gene families in Sorghum bicolor under phytohormone and abiotic stress.
Miyashita Y., Takasugi T., Ito Y.
Plant Science 2010  178  424-428
Identification and expression analysis of PIN genes in rice
Liu S., Wang J., Wang L., Wang X., Xue Y., WU P., Shou H.
Cell Res. 2009  19(9)  1110-9
Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family.
Wang JR,Hu H,Wang GH,Li J,Chen JY,Wu P
Mol Plant 2009  2(4)  823-31
Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones.
Carraro N., Forestan C., Canova S., Traas J., Varotto S.
Plant Physiol. 2006  142(1)  254-64
ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize.
Ivan A Paponov, William D Teale, Trebar M., Blilou I., Palme K.
Trends Plant Sci. 2005  10(4)  170-7
The PIN auxin efflux facilitators: evolutionary and functional perspectives.
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DB Reference
Gramene ID -
Gene Ontology response to water( GO:0009415 )
auxin homeostasis( GO:0010252 )
endoplasmic reticulum( GO:0005783 )
transmembrane transport( GO:0055085 )
integral to membrane( GO:0016021 )
Trait Ontology panicle length( TO:0000040 )
tiller number( TO:0000346 )
water stress trait( TO:0000237 )
auxin content( TO:0002672 )
plant height( TO:0000207 )
leaf number( TO:0000241 )
seed set percent( TO:0000455 )
yield trait( TO:0000371 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Oct 12, 2023