Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PIN5A
Gene Symbol Synonym OsPIN5a, OsPIN6
CGSNL Gene Name PIN PROTEIN 5A
Gene Name Synonym
Protein Name PIN PROTEIN 5A
Allele
Chromosome No. 1
Explanation BR000834, AP003437, Q651V6. OsPIN6 in Zhang et al. 2019. TO:0001041: root yield.
Trait Class Biochemical character
Vegetative organ - Root
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK066552
MSU ID LOC_Os01g69070.1
RAP ID Os01g0919800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Ouyang Q., Zhang Y., Yang X., Yang C., Hou D., Liu H., Xu H.
Plants (Basel) 2023  12(15) 
Overexpression of <i>OsPIN9</i> Impairs Chilling Tolerance via Disturbing ROS Homeostasis in Rice.
Du F., Wang Y., Wang J., Li Y., Zhang Y., Zhao X., Xu J., Li Z., Zhao T., Wang W., Fu B.
J Integr Plant Biol 2023   
The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.
Cui J., Nishide N., Mashiguchi K., Kuroha K., Miya M., Sugimoto K., Itoh J.I., Yamaguchi S., Izawa T.
Nat Commun 2023  14(1)  3191
Fertilization controls tiller numbers via transcriptional regulation of a MAX1-like gene in rice cultivation.
Yu N., Liang Y., Wang Q., Peng X., He Z., Hou X.
Sci Rep 2022  12(1)  6736
Transcriptomic analysis of OsRUS1 overexpression rice lines with rapid and dynamic leaf rolling morphology.
Chen R., Xu N., Yu B., Wu Q., Li X., Wang G., Huang J.
Plant Sci. 2020  298  110575
The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice.
Tripathi D.K., Rai P., Guerriero G., Sharma S., Corpas F.J., Singh V.P.
J. Exp. Bot. 2020   
Silicon induces adventitious root formation in rice (Oryza sativa L.) under arsenate stress with the involvement of nitric oxide and indole-3-acetic acid.
Zhang H., Tan X., Li L., He Y., Hong G., Li J., Lin L., Cheng Y., Yan F., Chen J., Sun Z.
Mol. Plant Pathol. 2019  20(8)  1093-1104
Suppression of auxin signalling promotes rice susceptibility to Rice black streaked dwarf virus infection.
Shao Y., Zhou H.Z., Wu Y., Zhang H., Lin J., Jiang X., He Q., Zhu J., Li Y., Yu H., Mao C.
Plant Cell 2019  31(6)  1257-1275
OsSPL3, an SBP-Domain Protein, Regulates crown root Development in Rice.
Zou Y., Liu X., Wang Q., Chen Y., Liu C., Qiu Y., Zhang W.
Biochim. Biophys. Acta 2014  1840(6)  1676-1685
OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.
Zhao F.Y.a, Han M.M.a, Zhang S.Y.b, Ren J.a, Hu F.a, Wang X.a
Russian Journal of Plant Physiology 2014  61  608-618
MAPKs as a cross point in H2O2 and auxin signaling under combined cadmium and zinc stress in rice roots
Akiba T., Hibara K.I., Kimura F., Tsuda K., Shibata K., Ishibashi M., Moriya C., Nakagawa K., Kurata N., Itoh J.I., Ito Y.
Plant Cell Physiol. 2014  55(1)  42-51
Organ fusion and defective shoot development in ONI3 mutants of rice.
ChenJia Shen, YouHuang Bai, SuiKang Wang, SaiNa Zhang, YunRong Wu, Chen M., DeAn Jiang, YanHua Qi
FEBS J. 2010  277(14)  2954-69
Expression profile of PIN, AUX/LAX and PGP auxin transporter gene families in Sorghum bicolor under phytohormone and abiotic stress.
Miyashita Y., Takasugi T., Ito Y.
Plant Science 2010  178  424-428
Identification and expression analysis of PIN genes in rice
Wang JR,Hu H,Wang GH,Li J,Chen JY,Wu P
Mol Plant 2009  2(4)  823-31
Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones.
Carraro N., Forestan C., Canova S., Traas J., Varotto S.
Plant Physiol. 2006  142(1)  254-64
ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize.
Ivan A Paponov, William D Teale, Trebar M., Blilou I., Palme K.
Trends Plant Sci. 2005  10(4)  170-7
The PIN auxin efflux facilitators: evolutionary and functional perspectives.
TextPresso Search Search textpresso for PIN5A ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to cold( GO:0009409 )
adventitious root development( GO:0048830 )
response to arsenic( GO:0046685 )
auxin mediated signaling pathway( GO:0009734 )
integral to membrane( GO:0016021 )
transmembrane transport( GO:0055085 )
defense response to virus( GO:0051607 )
Trait Ontology black streak dwarf virus resistance( TO:0000020 )
silicon sensitivity( TO:0000031 )
root number( TO:0000084 )
adventitious root number( TO:0001006 )
root fresh weight( TO:0000578 )
cold tolerance( TO:0000303 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Nov 23, 2023


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