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Basic Information
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CGSNL Gene Symbol
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PIN10A
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Gene Symbol Synonym
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PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3, OsPIN3t, PIN3t
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CGSNL Gene Name
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PIN PROTEIN 10A
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Gene Name Synonym
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PIN PROTEIN 3A
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Protein Name
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PIN PROTEIN 10A
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Allele
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pin3t, CR-ospin3t
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Chromosome No.
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1
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Explanation
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BR000832, AP003725, Q5VP70, auxin efflux carrier. gi:55297110. OsPIN3a in Zou et al. 2014 and Akiba et al. 2014, Maliket al. 2020. OsPIN3 in Deshpande et al. 2015, Lv et al. 2023. OsPIN3t in Jiang et al. 2023, Wang et al. 2025. TO:0001041: root yield. GO:2000280: regulation of root development. GO: 0060918: auxin transport.
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Trait Class
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Vegetative organ - Culm
Biochemical character
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK101504
AK063976
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MSU ID
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LOC_Os01g45550.1
LOC_Os01g45550.2
LOC_Os01g45550.3
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RAP ID
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Os01g0643300
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Wang W., Sang D., Li P., Gui S., Liang Y., Song Y., Zhang H., Cao J., Wang Z., Meng X., Xue H., Li J., Wang Y.
Plant Biotechnol. J. 2025 23(10) 4568-4579
LAZY5 acts in an LAZY1-independent pathway to regulate rice tiller angle.
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Ouyang Q., Zhang Y., Yang X., Yang C., Hou D., Liu H., Xu H.
Plants (Basel) 2023 12(15)
Overexpression of <i>OsPIN9</i> Impairs Chilling Tolerance via Disturbing ROS Homeostasis in Rice.
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Lv Y., Zhang X., Hu Y., Liu S., Yin Y., Wang X.
Front Plant Sci 2023 14 1162828
BOS1 is a basic helix-loop-helix transcription factor involved in regulating panicle development in rice.
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Jiang L., Yao B., Zhang X., Wu L., Fu Q., Zhao Y., Cao Y., Zhu R., Lu X., Huang W., Zhao J., Li K., Zhao S., Han L., Zhou X., Luo C., Zhu H., Yang J., Huang H., Zhu Z., He X., Friml J., Zhang Z., Liu C., Du Y.
Plant J. 2023 115(1) 155-174
Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.
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Ruan N., Dang Z., Wang M., Cao L., Wang Y., Liu S., Tang Y., Huang Y., Zhang Q., Xu Q., Chen W., Li F.
J. Exp. Bot. 2022 73(8) 2320-2335
FRAGILE CULM 18 encodes a UDP-glucuronic acid decarboxylase required for xylan biosynthesis and plant growth in rice.
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Pan J., Li Z., Wang Q., Yang L., Yao F., Liu W.
Plant Sci. 2020 290 110318
An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.
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Tripathi D.K., Rai P., Guerriero G., Sharma S., Corpas F.J., Singh V.P.
J. Exp. Bot. 2020
Silicon induces adventitious root formation in rice (Oryza sativa L.) under arsenate stress with the involvement of nitric oxide and indole-3-acetic acid.
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Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020 101(6) 1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
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Lee H.Y., Chen Z., Zhang C., Yoon G.M.
J. Exp. Bot. 2019 70(6) 1927-1940
Editing of the OsACS locus alters phosphate deficiency-induced adaptive responses in rice seedlings.
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Xu Y.X., Xiao M.Z., Liu Y., Fu J.L., He Y., Jiang D.A.
Plant Mol. Biol. 2017
The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.
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Wang T., Li C., Wu Z., Jia Y., Wang H., Sun S., Mao C., Wang X.
Front Plant Sci 2017 8 1121
Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote root hair Elongation.
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Ma Y., Yang C., He Y., Tian Z., Li J.
J. Exp. Bot. 2017 68(17) 4885-4898
Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.
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Deshpande G.M., Ramakrishna K., Chongloi G.L., Vijayraghavan U.
J. Exp. Bot. 2015 66(9) 2773-84
Functions for rice RFL in vegetative axillary meristem specification and outgrowth.
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Akiba T., Hibara K.I., Kimura F., Tsuda K., Shibata K., Ishibashi M., Moriya C., Nakagawa K., Kurata N., Itoh J.I., Ito Y.
Plant Cell Physiol. 2014 55(1) 42-51
Organ fusion and defective shoot development in ONI3 mutants of rice.
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Zou Y., Liu X., Wang Q., Chen Y., Liu C., Qiu Y., Zhang W.
Biochim. Biophys. Acta 2014 1840(6) 1676-1685
OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.
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Zhang Q., Li J., Zhang W., Yan S., Wang R., Zhao J., Li Y., Qi Z., Sun Z., Zhu Z.
Plant J. 2012 72(5) 805-16
The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance.
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Zhu Z.X., Liu Y., Liu S.J., Mao C.Z., Wu Y.R., Wu P.
Mol Plant 2011 5(1) 154-61
A Gain-of-Function Mutation in OsIAA11 Affects lateral root Development in Rice.
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Miyashita Y., Takasugi T., Ito Y.
Plant Science 2010 178 424-428
Identification and expression analysis of PIN genes in rice
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ChenJia Shen, YouHuang Bai, SuiKang Wang, SaiNa Zhang, YunRong Wu, Chen M., DeAn Jiang, YanHua Qi
FEBS J. 2010 277(14) 2954-69
Expression profile of PIN, AUX/LAX and PGP auxin transporter gene families in Sorghum bicolor under phytohormone and abiotic stress.
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Wang JR,Hu H,Wang GH,Li J,Chen JY,Wu P
Mol Plant 2009 2(4) 823-31
Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones.
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Carraro N., Forestan C., Canova S., Traas J., Varotto S.
Plant Physiol. 2006 142(1) 254-64
ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize.
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Ivan A Paponov, William D Teale, Trebar M., Blilou I., Palme K.
Trends Plant Sci. 2005 10(4) 170-7
The PIN auxin efflux facilitators: evolutionary and functional perspectives.
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Xu M, Zhu L, Shou H, Wu P.
Plant Cell Physiol. 2005 46(10) 1674-81
A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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negative gravitropism( GO:0009959 )
salicylic acid mediated signaling pathway( GO:0009863 )
response to salicylic acid stimulus( GO:0009751 )
root development( GO:0048364 )
endocytosis( GO:0006897 )
response to cold( GO:0009409 )
adventitious root development( GO:0048830 )
response to arsenic( GO:0046685 )
auxin mediated signaling pathway( GO:0009734 )
integral to membrane( GO:0016021 )
transmembrane transport( GO:0055085 )
response to abscisic acid stimulus( GO:0009737 )
response to starvation( GO:0042594 )
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Trait Ontology
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abscisic acid sensitivity( TO:0000615 )
silicon sensitivity( TO:0000031 )
root number( TO:0000084 )
adventitious root number( TO:0001006 )
root fresh weight( TO:0000578 )
cold tolerance( TO:0000303 )
root development trait( TO:0000656 )
tiller angle( TO:0000567 )
gravity response trait( TO:0002693 )
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Plant Ontology
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epidermal cell( PO:0004013 )
root development stage( PO:0007520 )
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Related Strains
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Phenotype images
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Last updated
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Nov 18, 2025
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Update info.