Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol EP3
Gene Symbol Synonym EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3
CGSNL Gene Name ERECT PANICLE 3
Gene Name Synonym LARGER PANICLE, F-box protein 76
Protein Name ep3, lp
Allele
Chromosome No. 2
Explanation TO:0000847: panicle anatomy and morphology trait. a Kelch repeat-containing F box protein. Os_F0106 in Hua et al. 2011. EP3 is a functional orthologue of Arabidopsis HWS gene (Yu et al. 2015).
Trait Class Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
Expression
Sequence/Locus
cDNA Accession No. AK064350
AK073921
AK287808
MSU ID LOC_Os02g15950.1
RAP ID Os02g0260200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019   
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
Qin R., Zeng D., Yang C., Akhter D., Alamin M., Jin X., Shi C.
Genes (Basel) 2018  9(6) 
<i>LTBSG1</i>, a New Allele of <i>BRD2</i>, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.
Jiang S., Sun S., Bai L., Ding G., Wang T., Xia T., Jiang H., Zhang X., Zhang F.
PLoS ONE 2017  12(7)  e0181037
Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield.
Yu H., Murchie E.H., González-Carranza ZH., Pyke K.A., Roberts J.A.
J. Exp. Bot. 2015   
Decreased photosynthesis in the ERECT PANICLE 3 (EP3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
Wang M., Yu Y., Haberer G., Marri P.R., Fan C., Goicoechea J.L., Zuccolo A., Song X., Kudrna D., Ammiraju J.S., Cossu R.M., Maldonado C., Chen J., Lee S., Sisneros N., de Baynast K., Golser W., Wissotski M., Kim W., Sanchez P., Ndjiondjop M.N., Sanni K., Long M., Carney J., Panaud O., Wicker T., Machado C.A., Chen M., Mayer K.F., Rounsley S., Wing R.A.
Nat. Genet. 2014  46(9)  982-8
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.
Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013  16(2)  213-20
Genes offering the potential for designing yield-related traits in rice.
Hua Z., Zou C., Shin-Han Shiu, Richard D Vierstra
PLoS ONE 2011  6(1)  e16219
Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift.
Li M. , Tang D. , Wang K. , Wu X. , Lu L. , Yu H. , Gu M. , Yan C. , Cheng Z.
Plant Biotechnol J. 2011  9(9)  1002-1013
Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice.
Xu G., Ma H., Nei M., Kong H.
Proc. Natl. Acad. Sci. U.S.A. 2009  106(3)  835-40
Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification.
Piao R,Jiang W,Ham TH,Choi MS,Qiao Y,Chu SH,Park JH,Woo MO,Jin Z,An G,Lee J,Koh HJ
Theor. Appl. Genet. 2009  119(8)  1497-506
Map-based cloning of the ERECT PANICLE 3 gene in rice.
Yang X., Udaya C Kalluri, Jawdy S., Lee E Gunter, Yin T., Timothy J Tschaplinski, David J Weston, Ranjan P., Gerald A Tuskan
Plant Physiol. 2008  148(3)  1189-200
The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants.
Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP.
Plant Physiol. 2007  143(4)  1467-1483
F-Box Proteins in Rice. Genome-Wide Analysis, Classification, Temporal and Spatial Gene Expression during Panicle and Seed Development, and Regulation by Light and Abiotic Stress.
TextPresso Search Search textpresso for EP3 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology organ development( GO:0048513 )
C4 photosynthesis( GO:0009760 )
guard cell differentiation( GO:0010052 )
stomatal movement( GO:0010118 )
Trait Ontology grain number( TO:0002759 )
grain yield( TO:0000396 )
inflorescence branching( TO:0000050 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Sep 3, 2019


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