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Basic Information
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CGSNL Gene Symbol
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EP3
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Gene Symbol Synonym
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EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3, OsFBK5, FBK5
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CGSNL Gene Name
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ERECT PANICLE 3
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Gene Name Synonym
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LARGER PANICLE, F-box protein 76, F-box-type E3 ubiquitin ligase K5
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Protein Name
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ep3, lp
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Allele
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Chromosome No.
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2
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Explanation
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TO:0000847: panicle anatomy and morphology trait. a Kelch repeat-containing F box protein. Os_F0106 in Hua et al. 2011. EP3 is a functional orthologue of Arabidopsis HWS gene (Yu et al. 2015). TO:0000862: floral organ morphology trait. . PO:0025610: stem hypodermis. TO:0000975: grain width. TO:0002741: grain surface area. TO:1000022: anther morphology trait. TO:0011008: stigma length.
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Trait Class
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Vegetative organ - Leaf
Vegetative organ - Culm
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
Reproductive organ - Spikelet, flower, glume, awn
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK064350
AK073921
AK287808
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MSU ID
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LOC_Os02g15950.1
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RAP ID
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Os02g0260200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Wang R., You X., Zhang C., Fang H., Wang M., Zhang F., Kang H., Xu X., Liu Z., Wang J., Zhao Q., Wang X., Hao Z., He F., Tao H., Wang D., Wang J., Fang L., Qin M., Zhao T., Zhang P., Xing H., Xiao Y., Liu W., Xie Q., Wang G.L., Ning Y.
Genome Biol. 2022 23(1) 154
An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome.
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Borna R.S., Murchie E.H., Pyke K.A., Roberts J.A., González-Carranza ZH.
Plant Biotechnol. J. 2022 20(2) 297-309
The rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.
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Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
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Qin R., Zeng D., Yang C., Akhter D., Alamin M., Jin X., Shi C.
Genes (Basel) 2018 9(6)
<i>LTBSG1</i>, a New Allele of <i>BRD2</i>, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.
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Jiang S., Sun S., Bai L., Ding G., Wang T., Xia T., Jiang H., Zhang X., Zhang F.
PLoS ONE 2017 12(7) e0181037
Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield.
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Yu H., Murchie E.H., González-Carranza ZH., Pyke K.A., Roberts J.A.
J. Exp. Bot. 2015
Decreased photosynthesis in the ERECT PANICLE 3 (EP3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
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Wang M., Yu Y., Haberer G., Marri P.R., Fan C., Goicoechea J.L., Zuccolo A., Song X., Kudrna D., Ammiraju J.S., Cossu R.M., Maldonado C., Chen J., Lee S., Sisneros N., de Baynast K., Golser W., Wissotski M., Kim W., Sanchez P., Ndjiondjop M.N., Sanni K., Long M., Carney J., Panaud O., Wicker T., Machado C.A., Chen M., Mayer K.F., Rounsley S., Wing R.A.
Nat. Genet. 2014 46(9) 982-8
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.
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Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013 16(2) 213-20
Genes offering the potential for designing yield-related traits in rice.
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Li M. , Tang D. , Wang K. , Wu X. , Lu L. , Yu H. , Gu M. , Yan C. , Cheng Z.
Plant Biotechnol J. 2011 9(9) 1002-1013
Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice.
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Hua Z., Zou C., Shin-Han Shiu, Richard D Vierstra
PLoS ONE 2011 6(1) e16219
Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift.
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Xu G., Ma H., Nei M., Kong H.
Proc. Natl. Acad. Sci. U.S.A. 2009 106(3) 835-40
Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification.
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Piao R,Jiang W,Ham TH,Choi MS,Qiao Y,Chu SH,Park JH,Woo MO,Jin Z,An G,Lee J,Koh HJ
Theor. Appl. Genet. 2009 119(8) 1497-506
Map-based cloning of the ERECT PANICLE 3 gene in rice.
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Yang X., Udaya C Kalluri, Jawdy S., Lee E Gunter, Yin T., Timothy J Tschaplinski, David J Weston, Ranjan P., Gerald A Tuskan
Plant Physiol. 2008 148(3) 1189-200
The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants.
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Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP.
Plant Physiol. 2007 143(4) 1467-1483
F-Box Proteins in Rice. Genome-Wide Analysis, Classification, Temporal and Spatial Gene Expression during Panicle and Seed Development, and Regulation by Light and Abiotic Stress.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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organ development( GO:0048513 )
floral organ development( GO:0048437 )
seed development( GO:0048316 )
inflorescence development( GO:0010229 )
flower development( GO:0009908 )
stomatal movement( GO:0010118 )
C4 photosynthesis( GO:0009760 )
guard cell differentiation( GO:0010052 )
nucleus( GO:0005634 )
cytoplasm( GO:0005737 )
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Trait Ontology
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grain number( TO:0002759 )
grain yield( TO:0000396 )
inflorescence branching( TO:0000050 )
growth and development trait( TO:0000357 )
flower development trait( TO:0000622 )
pollen fertility( TO:0000421 )
yield trait( TO:0000371 )
inflorescence development trait( TO:0000621 )
seed development trait( TO:0000653 )
flower organ size( TO:0002600 )
floral organ number( TO:0006038 )
grain size( TO:0000397 )
grain weight( TO:0000590 )
plant height( TO:0000207 )
leaf length( TO:0000135 )
leaf width( TO:0000370 )
floral organ development trait( TO:0006022 )
panicle length( TO:0000040 )
filled grain number( TO:0000447 )
grain length( TO:0000734 )
100-seed weight( TO:0000269 )
seed size( TO:0000391 )
glume number( TO:0006029 )
stamen number( TO:0000225 )
spikelet length( TO:0002768 )
spikelet width( TO:0000564 )
spikelet density( TO:0000625 )
anther length( TO:0000531 )
carpel number( TO:0006013 )
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Plant Ontology
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plant ovary( PO:0009072 )
pollen( PO:0025281 )
anther( PO:0009066 )
meristematic cell( PO:0004010 )
bundle sheath( PO:0006023 )
stem epidermis( PO:0025178 )
root epidermis( PO:0006036 )
root cap( PO:0020123 )
portion of meristem tissue( PO:0009013 )
primary root( PO:0020127 )
flower( PO:0009046 )
seed( PO:0009010 )
leaf( PO:0025034 )
stem( PO:0009047 )
root( PO:0009005 )
floral organ formation stage( PO:0025585 )
seed development stage( PO:0001170 )
inflorescence development stage( PO:0001083 )
flower development stage( PO:0007615 )
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Related Strains
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Phenotype images
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Last updated
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Feb 1, 2023
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Update info.