Update info.Gene - Detail
Detail of Gene
Click here for feedback| Basic Information | |
|---|---|
| CGSNL Gene Symbol | ATG4 |
| Gene Symbol Synonym | Atg4, OsAtg4, APG4, Atg4b, OsATG4b |
| CGSNL Gene Name | AUTOPHAGY ASSOCIATED GENE 4 |
| Gene Name Synonym | autophagy 4, AUTOPHAGY RELATED4b, autophagy 4b, AUTOPHAGY ASSOCIATED GENE 4B |
| Protein Name | |
| Allele | |
| Chromosome No. | 4 |
| Explanation | Q7XPW8, Q2XPP4, DQ269984, ABB77259. PO:0020104; leaf sheath ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0009025; leaf. LOC_Os04g58560. Atg4b in Chung et al. 2009. |
| Trait Class |
Biochemical character
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| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK069012
|
| MSU ID |
LOC_Os04g58560.1
LOC_Os04g58560.2 |
| RAP ID |
Os04g0682000 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
|
Xia K., Liu T., Ouyang J., Wang R., Fan T., Zhang M.
DNA Res. 2011 18(5) 363-77 Genome-wide identification, classification, and expression analysis of autophagy-associated gene homologues in rice (Oryza sativa L.).
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Chung T., Suttangkakul A., Richard D Vierstra
Plant Physiol. 2009 149(1) 220-34 The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability.
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Su,W., Ma,H., Liu,C., Wu,J. and Yang,J.
Mol. Biol. Rep. 2006 33(4) 273-278 Identification and characterization of two rice autophagy associated genes, OsAtg8 and OsAtg4.
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| TextPresso Search | Search textpresso for ATG4 ( Recent references may be retrievable, but without any warranty ) |
| DB Reference | |
| Gramene ID | GR:0101172 |
| Ontologies | |
| Gene Ontology |
protein binding( GO:0005515 )
cytoplasm( GO:0005737 ) vacuolar lumen( GO:0005775 ) autophagic vacuole( GO:0005776 ) cysteine-type carboxypeptidase activity( GO:0016807 ) autophagy( GO:0006914 ) APG8-specific protease activity( GO:0019786 ) |
| Trait Ontology | - |
| Plant Ontology |
root( PO:0009005 )
vascular leaf( PO:0009025 ) inflorescence( PO:0009049 ) leaf sheath( PO:0020104 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Jul 21, 2015 | |
