Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PPS
Gene Symbol Synonym OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1, OsRING347, RING347
Gene Name Synonym COP1 ortholog, CONSTITUTIVE PHOTOMORPHOGENIC 1, yellowish-pericarp embryo lethal , RING-type E3 ubiquitin ligase 347
Protein Name
Allele pps-1, pps-2, yel-hc, yel-sk, yel-cc
Chromosome No. 2
Explanation Rice pps is a heterochronic mutant that shows a prolonged juvenile phase. In addition, pps shows early flowering. Germplasm: Taichung 65. AB040053. TO:0000748: leaf anatomy and morphology trait. AF261992, AF289544. OsRFP (RING finger protein). lodging resistance. TO:0000756: stem internode anatomy and morphology trait.
Trait Class Heterochrony
Tolerance and resistance - Stress tolerance
Reproductive organ - Heading date
Seed - Morphological traits - Embryo
Seed - Morphological traits - Grain shape
Coloration - Others
Seed - Physiological traits - Dormancy
cDNA Accession No. AK111614
MSU ID LOC_Os02g53140.1
RAP ID Os02g0771100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Han S., Liu Y., Bao A., Zeng H., Huang G., Geng M., Zhang C., Zhang Q., Lu J., Wu M., Guo L.
J. Plant Physiol. 2023  280  153904
OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.
Wang R., You X., Zhang C., Fang H., Wang M., Zhang F., Kang H., Xu X., Liu Z., Wang J., Zhao Q., Wang X., Hao Z., He F., Tao H., Wang D., Wang J., Fang L., Qin M., Zhao T., Zhang P., Xing H., Xiao Y., Liu W., Xie Q., Wang G.L., Ning Y.
Genome Biol. 2022  23(1)  154
An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome.
Yin M., Ma H., Wang M., Chu G., Liu Y., Xu C., Zhang X., Wang D., Chen S.
Sci Rep 2021  11(1)  15026
Transcriptome analysis of flowering regulation by sowing date in Japonica Rice (Oryza sativa L.).
Kim B., Piao R., Lee G., Koh E., Lee Y., Woo S., Reflinur, Jiang W., Septiningsih E.M., Thomson M.J., Koh H.J.
Theor. Appl. Genet. 2021  134(8)  2587-2601
OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.).
Hirano K., Masuda R., Takase W., Morinaka Y., Kawamura M., Takeuchi Y., Takagi H., Yaegashi H., Natsume S., Terauchi R., Kotake T., Matsushita Y., Sazuka T.
Planta 2017   
Screening of rice mutants with improved saccharification efficiency results in the identification of CONSTITUTIVE PHOTOMORPHOGENIC 1 and GOLD HULL AND INTERNODE 1.
Hwang S.G., Park H.M., Han A.R., Jang C.S.
J. Plant Physiol. 2016  191  140-8
Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression.
Hwang S.G., Kim J.J., Lim S.D., Park Y.C., Moon J.C., Jang C.S.
Physiol Plant 2016   
Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.
Ranjan A., Dickopf S., Ullrich K.K., Rensing S.A., Hoecker U.
BMC Plant Biol. 2014  14  178
Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation.
Ouyang Y., Huang X., Lu Z., Yao J.
BMC Genomics 2012  13(1)  100
Genomic survey, expression profile and co-expression network analysis of OsWD40 family in rice.
Tanaka N. , Itoh H. , Sentoku N. , Kojima M. , Sakakibara H. , Izawa T. , Itoh J.I. , Nagato Y.
Plant Cell 2011  23(6)  2143-54
The COP1 Ortholog PPS Regulates the Juvenile-Adult and Vegetative-Reproductive Phase Changes in Rice.
N. Tanaka, J-I. Itoh and Y. Nagato
RGN 2008  24  16-17
Rice PETER PAN SYNDROME gene regulates juvenile-adult phase transition.
Zhang YC,Gong SF,Li QH,Sang Y,Yang HQ
Plant J. 2006  46  971-83
Functional and signaling mechanism analysis of rice CRYPTOCHROME 1.
Raghuvanshi,S., Kelkar,A., Khurana,J.P. and Tyagi,A.K.
DNA Res. 2001  8(2)  73-79
Isolation and molecular characterization of the COP1 gene homolog from rice, Oryza sativa L. subsp. Indica var. Pusa Basmati 1.
T Tsuge, N Inagaki, T Yoshizumi, H Shimada, T Kawamoto, R Matsuki, N Yamamoto, M Matsui
Mol. Genet. Genomics 2001  265(1)  43-50
Phytochrome-mediated control of COP1 gene expression in rice plants.
TextPresso Search Search textpresso for PPS ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to blue light( GO:0009637 )
response to temperature stimulus( GO:0009266 )
response to light stimulus( GO:0009416 )
regulation of flavonoid biosynthetic process( GO:0009962 )
embryonic development ending in seed dormancy( GO:0009793 )
nucleus( GO:0005634 )
DNA repair( GO:0006281 )
regulation of stomatal movement( GO:0010119 )
ligase activity( GO:0016874 )
zinc ion binding( GO:0008270 )
photomorphogenesis( GO:0009640 )
shade avoidance( GO:0009641 )
response to abiotic stimulus( GO:0009628 )
vegetative to reproductive phase transition( GO:0010228 )
anthocyanin metabolic process( GO:0046283 )
response to arsenic( GO:0046685 )
photoperiodism, flowering( GO:0048573 )
Trait Ontology flowering time( TO:0002616 )
photoperiod sensitivity( TO:0000229 )
days to heading( TO:0000137 )
abiotic stress trait( TO:0000168 )
grain yield( TO:0000396 )
leaf color( TO:0000326 )
ferulic acid content( TO:0000675 )
monosaccharide content( TO:0006006 )
polysaccharide content( TO:0006007 )
stem strength( TO:0000051 )
pericarp color( TO:0000707 )
grain size( TO:0000397 )
grain weight( TO:0000590 )
flavonoid content( TO:0000290 )
embryo related trait( TO:0000064 )
germination rate( TO:0000430 )
temperature response trait( TO:0000432 )
light sensitivity( TO:0000075 )
blue light sensitivity( TO:0000159 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Jul 19, 2023