Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol CRL4
Gene Symbol Synonym OsGNOM1, GNOM1, CRL4/GNOM1, CRL2/CRL3
CGSNL Gene Name CROWN ROOTLESS 4
Gene Name Synonym crown rootless4
Protein Name
Allele crl4, gnom1-1, gnom1-2, gnom1-3, gnom1-4
Chromosome No. 3
Explanation a guanine nucleotide exchange factor for ADP ribosylation factor. OsGNOM1 was mapped to the long arm of chromosome 3 between the single sequence repeat (SSR) marker RM15621 and a sequence-tagged site (STS) marker STS18. EAY91294. CRL2/CRL3 in Phule et al. 2018.
Trait Class Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AF262214
MSU ID LOC_Os03g46330.1
RAP ID Os03g0666100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Mao C., He J., Liu L., Deng Q., Yao X., Liu C., Qiao Y., Li P., Ming F.
Plant Biotechnol. J. 2020  18(2)  429-442
OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.
Phule A.S., Barbadikar K.M., Madhav M.S., Senguttuvel P., Babu MBBP., Ananda Kumar P.
3 Biotech 2018  8(9)  383
Genes encoding membrane proteins showed stable expression in rice under aerobic condition: novel set of reference genes for expression studies.
Zhao Y., Cheng S., Song Y., Huang Y., Zhou S., Liu X., Zhou D.X.
Plant Cell 2015   
The Interaction between Rice ERF3 and WOX11 Promotes crown root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
Liu S., Wang J., Wang L., Wang X., Xue Y., WU P., Shou H.
Cell Res. 2009  19(9)  1110-9
Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family.
Yuka Kitomi, Atsushi Ogawa, Hidemi Kitano and Yoshiaki Inukai
Plant Root 2008    19-28
CRL4 regulates crown root formation through auxin transport in rice
DB Reference
Gramene ID -
Ontologies
Gene Ontology cytokinesis by cell plate formation( GO:0000911 )
establishment of planar polarity( GO:0001736 )
ARF guanyl-nucleotide exchange factor activity( GO:0005086 )
trans-Golgi network( GO:0005802 )
cell adhesion( GO:0007155 )
unidimensional cell growth( GO:0009826 )
longitudinal axis specification( GO:0009942 )
phloem or xylem histogenesis( GO:0010087 )
GTP:GDP antiporter activity( GO:0010292 )
basipetal auxin transport( GO:0010540 )
vesicle-mediated transport( GO:0016192 )
response to anoxia( GO:0034059 )
ER body organization( GO:0080119 )
root hair cell differentiation( GO:0048765 )
regulation of ARF protein signal transduction( GO:0032012 )
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Mar 9, 2020

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