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Detail of Gene

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Basic Information
CGSNL Gene Symbol RF1
Gene Symbol Synonym Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
Gene Name Synonym Pollen fertility restoration1, Pollen fertility restoration-1, "Rf1 protein, mitochondrial precursor", "Rf1 protein, mitochondrial", "Protein Rf1, mitochondrial", fertility restorer 5, Pentatricopeptide Repeat Protein RF5, pentatricopeptide repeat protein 791, Fertile revertant from II-32A, Pollen fertility restoration-5, RESTORATION OF FERTILITY 5, RESTORATION OF FERTILITY 1A, pentatricopeptide repeat motif containing gene 6, PPR motif-containing gene 6
Protein Name RF1 PROTEIN
Allele Rf1-a, Rf1-b, Rf1-c, Rf1-d, Rf1-e, rf-1
Chromosome No. 10
Explanation Pollen fertility restoration gene of BT-type cytoplasmic male sterility, being located on chromosome 10 between RFLP markers fL601 and C1361. AB179840. AB110443, AB110444. Q76C99. AB470406, AB470408. PO:0009066; anther. a 791-aa protein containing 16 PPR motifs. WA type CMS. Rf5 is identical to Rf1 (Rf1a) in BTCMS rice (Hu et al. 2012). LOC_Os10g35440. DQ311052, DQ311053. (Os10g0497450 in Ncbi and UniProt). a subunit of the restoration of fertility complex (RFC).
Trait Class Reproductive organ - Pollination, fertilization, fertility - Fertility restoration
Tolerance and resistance - Stress tolerance
Expression anther - An7 - Formation of binucleated gametophyte
cDNA Accession No. AK107042
MSU ID LOC_Os10g35440.1
RAP ID Os10g0497432
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Locate(cM) 16.5
Link map Classical linkage map
Wang B., Li J.
Plant Cell 2019  31(7)  1416-1417
Understanding the Molecular Bases of Agronomic Trait Improvement in Rice.
Fan F., Li N., Chen Y., Liu X., Sun H., Wang J., He G., Zhu Y., Li S.
Front Plant Sci 2017  8  986
Development of Elite BPH-Resistant Wide-Spectrum Restorer Lines for Three and Two Line Hybrid Rice.
Qin X., Huang Q., Xiao H., Zhang Q., Ni C., Xu Y., Liu G., Yang D., Zhu Y., Hu J.
New Phytol. 2016  210(3)  934-45
The rice DUF1620-containing and WD40-like repeat protein is required for the assembly of the restoration of fertility complex.
Hu J., Huang W., Huang Q., Qin X., Dan Z., Yao G., Zhu R., Zhu Y.
New Phytol. 2013  199(1)  52-8
The mechanism of ORFH79 suppression with the artificial restorer fertility gene Mt-GRP162.
Song Y.a, Cui J.a, Zhang H.b, Wang G.a, Zhao F.J.c, Shen Z.a
Plant Soil 2013  366  647-658
Proteomic analysis of copper stress responses in the roots of two rice (Oryza sativa L.) varieties differing in Cu tolerance
Hu J., Wang K., Huang W., Liu G., Gao Y., Wang J., Huang Q., Ji Y., Qin X., Wan L., Zhu R., Li S., Yang D., Zhu Y.
Plant Cell 2012  24(1)  109-22
The rice pentatricopeptide repeat protein Rf5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162.
Ohta,H., Ogino,A., Kasai,M., Sano,Y. and Kanazawa,A.
Plant Cell Rep. 2010  29(4)  359-369
Fertility restoration by Ifr1 in rice with BT-type cytoplasmic male sterility is associated with a reduced level, but not processing, of atp6-orf79 co-transcribed RNA
Ngangkham U., Parida S.K., De S., Anand Raj Kumar K., Singh A.K., Singh N.K., Mohapatra T.
Molecular Breeding 2010  26(2)  275-292
Genic markers for wild abortive (WA) cytoplasm based male sterility and its fertility restoration in rice
Kato H,Tezuka K,Feng YY,Kawamoto T,Takahashi H,Mori K,Akagi H
Heredity 2007  99  516-24
Structural diversity and evolution of the Rf-1 locus in the genus Oryza.
Wang,Z., Zou,Y., Li,X., Zhang,Q., Chen,L., Wu,H., Su,D., Chen,Y., Guo,J., Luo,D., Long,Y., Zhong,Y. and Liu,Y.G.
Plant Cell 2006  18(3)  676-687
Cytoplasmic Male Sterility of Rice with Boro II Cytoplasm Is Caused by a Cytotoxic Peptide and Is Restored by Two Related PPR Motif Genes via Distinct Modes of mRNA Silencing.
Akagi,H., Nakamura,A., Yokozeki-Misono,Y., Inagaki,A., Takahashi,H., Mori,K. and Fujimura,T.
Theor. Appl. Genet. 2004  108(8)  1449-1457
Positional cloning of the rice Rf-1 gene, a restorer of BT-type cytoplasmic male sterility that encodes a mitochondria-targeting PPR protein.
Komori,T., Ohta,S., Murai,N., Takakura,Y., Kuraya,Y., Suzuki,S., Hiei,Y., Imaseki,H. and Nitta,N.
Plant J. 2004  37(3)  315-325
Map-based cloning of a fertility restorer gene, Rf-1, in rice (Oryza sativa L.).
Komori,T. and Nitta,N.
Plant Breeding 2004  123(6)  549-553
A simple method to control the seed purity of japonica hybrid rice varieties using PCR-based markers
Liu XQ, Xu X, Tan YP, Li SQ, Hu J, Huang JY, Yang DC, Li YS, Zhu YG.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2004  271(5)  586-594
Inheritance and molecular mapping of two fertility-restoring loci for Honglian gametophytic cytoplasmic male sterility in rice (Oryza sativaL.).
Kazama,T. and Toriyama,K.
FEBS Lett. 2003  544(1-3)  99-102
A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice.
Tao, D., P. Xu, J. Li, Y.Yang, F. Hu, J. Zhou, X.L. Tan and M. Jones
RGN 2002  19  23-27.
Inheritance of japonica upland rice restoration lines and their restoration gene mapping.
Shen, Y.W., Z.Q. Guan, J. Lu, J.Y. Zhuang, K.L. Zheng, M.W. Gao and X.M. Wang
Theor. Appl. Genet. 1998  97  261-266.
Linkage analysis of a fertility restoring mutant generated from CMS rice.
Ichikawa, N., N. Kishimoto, A. Inagaki, A. Nakamura, Y. Koshino, Y. Yokozeki, M. Oka, S. Samoto, H. Akagi, K. Higo, C. Shinjyo, T. Fujimura and H. Shimada
Molecular Breeding 1997  3  195-202.
A rapid PCR-aided selection of a rice line containing the Rf-1 gene which is involved in restoration of the cytoplasmic male sterility.
Akagi, H., Y. Yokozeki, A. Inagaki, A. Nakamura and T. Fujimura
Genome 1996  39  1205-1209.
A codominant DNA marker closely linked to the rice nuclear restorer gene, Rf-1, identified with inter-SSR fingerprinting.
Shen, Y., Q. Cai, M. Gao and X. Wang
Euphytica 1996  90  17-23.
Isolation and genetic characterization of a fertility-restoring revertant induced from cytoplamic male sterile rice.
Shen, Y., Z. Guan, H. Qiang, J. Lu, K. Zheng and X. Wang
RGN 1996  13  115-117.
Identification of RAPD markers linked to fertility restoring gene of rice cytoplasmic male sterile line.
Yokozeki, Y., A. Nakamura, A. Inagaki, N. Ichikawa, Y. Koshino, H. Akagi, H. Shimada, T. Tsuchiya, C. Shinjyo and T. Fujimura
Breeding Science 1996  46(Suppl. 1)  73
DNA markers of a fertility restoration gene Rf-1 in rice, Oryza sativa L.
Yu, Z.H., S.R. McCouch, T. Kinoshita, S. Sato and S.D. Tanksley
Genome 1995  38  566-574.
Association of morphological and RFLP markers in rice (Oryza sativa L. ).
Akagi,H., Sakamoto,M., Shinjyo,C., Shimada,H. and Fujimura,T.
Curr. Genet. 1994  25(1)  52-58
A unique sequence located downstream from the rice mitochondrial atp6 may cause male sterility
Shen, Y.W., Q.H. Cai and M.W. Gao
RGN 1993  10  90-92.
Preliminary characterization of fertilty-restoring mutants induced from cytoplasmic male-sterile rice.
Fukuta, Y., M. Yano and K. Fukui
Japan. J. Breed. 1992  42(Suppl. 1)  164-165.
Linkage analysis of the restorer gene (Rf-1) in rice using restriction fragment length polymorphism markers.
Yu, Z.H., T. Kinoshita, S. Sato and S.D. Tanksley
RGN 1992  9  116-118.
Morphological and RFLP markers are associated in rice.
Shinjyo, C.
Exploitation and identification of rice gene resources. N. Iwata, ed. (Report of Grant-in-Aid for Scientific Research). 1990    106-111.
Identification of male sterile cytoplasms and fertility genes derived from wild species.
Sato, S., L. Sakamoto and S. Nakasone
RGN 1985  2  59-60.
Location of Ef-1 for earliness on Nishimura's seventh chromosome.
Maekawa, M.
Mem. Fac. Agr. Hokkaido Univ. 1982  13(2)  146-177.
Studies on genetical difference between distantly related rice varieties.
Shinjyo, C.
Sci. Bull. Coll. Agr. Univ. Ryukyus 1975  22  1-57.
Genetical studies of cytoplasmic male sterility and fertility restoration in rice, Oryza sativa L.
Shinjyo, C.
Jpn. J. Genet. 1969  44(3)  149-156.
Cytoplasmic-genetic male sterility in cultivated rice, Oryza sativa L.
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DB Reference
Gramene ID GR:0060740,GR:0060744
Gene Ontology mitochondrion( GO:0005739 )
multicellular organismal development( GO:0007275 )
response to copper ion( GO:0046688 )
Trait Ontology male fertility restoration trait( TO:0000308 )
female fertility restoration trait( TO:0000498 )
copper sensitivity( TO:0000021 )
Plant Ontology anther( PO:0009066 )
Related Strains
Phenotype images
Last updated
Feb 5, 2020